Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0254 ATGGAAGGCAGGACGTCTGGTTTAGTCTCATTGACAGGTTCTAGTGGAAATACTTGTCGTGTTCAATTGGTTAAGGAGGGGAATGATCTATTCTTCCATCATGGATGGCTAACTTTTTTGGAAGATCATTTTATAGAAGTTGGTGATCTTTTGGTTTTCAGATATGAAGGTCACTTGCACTTCACTGTGCTAGTTTTTGATCAAAGAGCATGTGAGTATCTAAAATGCAGTCAAAATTCATGTGACCTCGATCATATTAATGCACATAAAAGAAATAGGGAGGAGAATTGTTCTTTGAATGTTGTTGCTGAAGGCTTGCTGAAGAAAATGAAAGGGACTTCCTTTGAGAACCAGGGTCCAGGAACTCAAGATGAGTATAAGGCTGCTATGCAGATTGGAAGTGGGAAAGAAGATGATCAATATATGCGTAGTAGAGTTTGTCTGTCAAAGTTATCGTCATTCGATGAGAAAAGAGTAGCTCAATTGTTTACTTCATCACCTCTCCCGTATTTTGTGAGAATCATGAAAAGCTTCAACATTAGTGGTTCATATACTCTGAATATCCCGTATCAATTTTCAATGGAACATCTTCCAAACTGCAAGATAAAGATCATCCTTCATAATATCAAAGGAGAGCGTTGGACTGTTAATTCTGTGCCAACAACAAGAGTACATACGAATCACACTCTCTGTGATGGATGGATGGCTTTTGTTCGTGACAATAACATCAAGGTTGGGGATATCTGCATTTTTGAACTTGTGCATGAGTGTGAATTATGTGTCCGTGTTGTTGGAGTAGGAAAAGATGGGATAGACTGTCAGGTTGGAAAAGTAGCTTGTAGTAGGCCTCTTACAGGACATTCCATCAATTCCCATAGAAGTTCTCAATATATGCCGATCAAGGCCAAAGTCAATCCAAATTGCAATGGAAATGTTGATCTATCTGATAAAAAGCGGTCAAGGATGGGTCAAGATGCTGTTCTGTCTAAATATAATTTGATAGCTTTACGTTTCTGCTAG 1020 0.3863 MEGRTSGLVSLTGSSGNTCRVQLVKEGNDLFFHHGWLTFLEDHFIEVGDLLVFRYEGHLHFTVLVFDQRACEYLKCSQNSCDLDHINAHKRNREENCSLNVVAEGLLKKMKGTSFENQGPGTQDEYKAAMQIGSGKEDDQYMRSRVCLSKLSSFDEKRVAQLFTSSPLPYFVRIMKSFNISGSYTLNIPYQFSMEHLPNCKIKIILHNIKGERWTVNSVPTTRVHTNHTLCDGWMAFVRDNNIKVGDICIFELVHECELCVRVVGVGKDGIDCQVGKVACSRPLTGHSINSHRSSQYMPIKAKVNPNCNGNVDLSDKKRSRMGQDAVLSKYNLIALRFC 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0254 339 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 2 268 IPR044837 -
Alju11g0254 339 Pfam B3 DNA binding domain 175 262 IPR003340 GO:0003677
Alju11g0254 339 Pfam B3 DNA binding domain 5 68 IPR003340 GO:0003677
Alju11g0254 339 CDD B3_DNA 1 67 IPR003340 GO:0003677
Alju11g0254 339 Gene3D - 152 267 IPR015300 -
Alju11g0254 339 ProSiteProfiles B3 DNA-binding domain profile. 171 267 IPR003340 GO:0003677
Alju11g0254 339 ProSiteProfiles B3 DNA-binding domain profile. 1 69 IPR003340 GO:0003677
Alju11g0254 339 SUPERFAMILY DNA-binding pseudobarrel domain 165 265 IPR015300 -
Alju11g0254 339 Gene3D - 1 71 IPR015300 -
Alju11g0254 339 CDD B3_DNA 169 263 IPR003340 GO:0003677
Alju11g0254 339 SUPERFAMILY DNA-binding pseudobarrel domain 6 71 IPR015300 -
Alju11g0254 339 SMART B3_2 171 267 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0254 Alju-ChrAlju11 2502935 2504585 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0254 9 265 B3 DNA Binding Superfamily AT3G18990 23.934 1.33e-13 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju11g0254 B3 8.3e-13 CL0405