LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju11g0237	ATGAAAGAGACTAAGATAATCACAAACAAGTTTGTGAAATCGGAGTTTCTGAATGAAGCTCCGAGAGTTGTACGGATCAGTGTCACCGATCACTACGCGACTGACACCTCAAGCGACGACGATGAATATGAACACTTCCAACACCGAAGAATGAAGAGGTTCGTTCACGAAATCAAAATGGAGAAATGTTCCAATTCTCCGGCGAACAGGGAGGTTCACGGAGGAGGGACCAATAACTCTGTTTTGAAACAGAGGTACAGCAGAAACAACTCCGGTAAGGTCCGACCCGTAAAATCCGAACAGGTGGACCCGAAGGTGAAGAAGTACCGCGGCGTTCGACTGCGGCCGTGGGGACGGTGGTCGGCGGAGATCAGAGATCCGGTGCGTGGGCAAAGGCTGTGGCTGGGCACTTTCAACACGGCGGAGGAGGCGGCGGTGTCGTACGACAGAGCAGCTATTCGTATTAAAGGTGCTAATGCGACTACAAATATTCTCCAACCACCGCCTAAAATTGACGAAGTTATTGAAGAATCGGAATCAAACTCAATGATGATGAACAACATTGAGCTGTTCAAAGAGCCTCGCATGTCTTCCCCAACCTCTGTACTGAGATTCCAGTATTCTCTGGAAGAACACAAAACAGAGCCCAGAGAAGTAAAAGAAGAAGTAGAATCAGAGGCATATTTCCAAGACAGTAATTTATGGTTCCCAGATTCTCAATTTTCTTGTCAATATTCAGAATACGAAGAAGGCCCTCTCCCAATGTTCTTCGACCACATCACTTCAAACGATAATTTGAATTTCAGAGACAGTCCATTCCATCTGGAACAAGATTTTGAATTCTGTAAATGGGACGTAGACAGCTACTTTCAAGAACAAGGCAGTACAGAAAACTGGGTTTGA	903	0.4585	MKETKIITNKFVKSEFLNEAPRVVRISVTDHYATDTSSDDDEYEHFQHRRMKRFVHEIKMEKCSNSPANREVHGGGTNNSVLKQRYSRNNSGKVRPVKSEQVDPKVKKYRGVRLRPWGRWSAEIRDPVRGQRLWLGTFNTAEEAAVSYDRAAIRIKGANATTNILQPPPKIDEVIEESESNSMMMNNIELFKEPRMSSPTSVLRFQYSLEEHKTEPREVKEEVESEAYFQDSNLWFPDSQFSCQYSEYEEGPLPMFFDHITSNDNLNFRDSPFHLEQDFEFCKWDVDSYFQEQGSTENWV	300

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju11g0237	300	CDD	AP2	107	163	IPR001471	GO:0003700\|GO:0006355
	Alju11g0237	300	ProSiteProfiles	AP2/ERF domain profile.	108	165	IPR001471	GO:0003700\|GO:0006355
	Alju11g0237	300	Gene3D	AP2/ERF domain	107	165	IPR036955	GO:0003700\|GO:0006355
	Alju11g0237	300	MobiDBLite	consensus disorder prediction	64	102	-	-
	Alju11g0237	300	PRINTS	Ethylene responsive element binding protein signature	131	147	IPR001471	GO:0003700\|GO:0006355
	Alju11g0237	300	PRINTS	Ethylene responsive element binding protein signature	109	120	IPR001471	GO:0003700\|GO:0006355
	Alju11g0237	300	SMART	rav1_2	108	171	IPR001471	GO:0003700\|GO:0006355
	Alju11g0237	300	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	20	220	-	-
	Alju11g0237	300	MobiDBLite	consensus disorder prediction	70	96	-	-
	Alju11g0237	300	FunFam	Ethylene-responsive transcription factor 2	107	166	-	-
	Alju11g0237	300	Pfam	AP2 domain	108	157	IPR001471	GO:0003700\|GO:0006355
	Alju11g0237	300	SUPERFAMILY	DNA-binding domain	108	164	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju11g0237	Alju-ChrAlju11	2328567	2329469	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju11g0237	1	293	AP2-EREBP Transcription Factor Family	AT2G46310	38.033	8.44e-47	157

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Alju11g0237		AP2	1.2e-12	CL0081