Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0136 ATGCAATCTACTGGTCCCGGTAGTGGTGGACCCTGCCGGAACCCGGGAGTGGGGCCGGCAGGGCGTGCCGCATCGTCAGCTGCTTCCCAATCCTCTCCATCTTCGGCAGTTTCAACGTCTCACTTGGGGCTAGACACGTTGCAGCAGCAGCAACACCAGCAGATTGGTTCTAGGCAGTCATTGCAACAGCAACTGCTTAGAAAACCTGAAGGGAATGAAACATTTTTAGCATATCAAGCAGGGCTTCAAGGGGTGTATGGTACTAACAATTTCTCATCTCCCAGTCCTGTACAACTGCCACAGCAATCACGGAAATCAATTGATTTCACTCAGCATGGTCCCAGTCAGGAGGCCCAGATCAGGGGTCAAGGCATGGAGCAACAAATGCCTAATCCTGTCCATCAAGCATACCTTCAAATTGCTCTGAAAGCTGCCCAACAAAAGTCTGCGTTGGCAATGCAATCACAGCAGCAAACTAAAATGGGAATGTTTGGCTCTTCAACTGTAAAGGATCAAGAAATGCGTATGGGAAACTTGAAAATGCAGGAACTAATTCCCTTGCAGGCAGTTAATCAAGCACATTGTTCGACTCCTAGGAATTCATCTGAACAATTCTCTCGTGGGGAAAAGCAGATTGATCAAGGACAGCATCAAGCAATGGATCACAAGAGTGAGGGAAAGTCTTCAACCCAGGGACCGGTCATTGGGCACATAATGCCTGGAAACATGATAAGACCCATGCAAGCACCTACAACTCCTCAAGGCATCCACAATTCTGTGAACAACCAGATGGTGGTATCTGCTCAACTGCATGCTTTGCAGGCATGGGCACATGAACGTAACATTGATCTATCGCATCCTGCAAATGCTAACTTAATGGCACAACTCATTCCTATGATGCAGTCAAAGATGGCTTCACAACAAAAGCCAAATGAGAATAATGTTGCTCCTCAATCATCTCCTGTCCCTGTTTCAAAACAGCAAGTTACTTCTCCAATGGAGAACCCATCTCATGCTAATTCATCAAGTGACTTGTCTGGGAAGTCTGGATGTGCAAAAGCCAGGCAGACAGTTCCCCCCAGCCACTTCGTTCCACCAACAAATACTGGTACAGCCAGTAGTGGCAGTGATGTGGCAGTGCAACAAATTAACATTCATGGCAGAGAGTCTCAAGCATCTCTGAGGCAGCCTGGTGCTGTTGGAAACGGATTGCCTCCTATGCATCCCCAACAGTTTTCTGCCAATATGAATCATGTTGCAGATCATCCTTTGAATGCCAAAAAATTACTACCAGGACCAGATTTACCACAAGTTCCGCACATGAGGCAGTTAAACCAATCTTCTGCTCAGACTACTGGTTCTACAAATGAAGGGACTTCAGGAAATAATGTCAAACCCCTTGGGACACCAACTCAGATACCTCAGCAACGACCTGGATTTACCAAACAGCAGTTGCATGTACTTAAAGCACAGATATTAGCACTCAGGAGGCTGAAGAAAGGAGAGGGTGCACTTCCACAAGAACTTCTTCAGGCTATTGTTCCACCACCTCTTGAGTTGCAATTGCAGCAGACAATCCATCCTGCTGGAGGACAGAATATAGAGAAATCTGCTGGCAACACCGTGGCAGAACACCCAAGGCAGATTGAGTCCAAAACAAAGGATATCCAATCTGTCCCTGCAATAAATGCACCGAGTTCCTCAAAGCAGGAAGCCTCTTCCAGAGATGAGAAATCCACTGCTCCAACAGTTCATATGCAAACTATGCCGGTTGTGCCAAAGGAAACTGCTTCTGTTGGAAAAGAAGAGCTGCATTCAATGATGTCAGACCAGGAGAATGATCGTGGAATTAACAGAACTCCTGTTAGAACAGAGTTGCCTCTAGATAGGGGAAAGGCTATCGTACCTCATGACACAGTTCAACTTAACAAACCTGCACAAACTAGCTCTGTTACTCAACCAAAGGATATGGCATCCACAAGAAAATATCATGGGCCCCTTTTTGATTTCCCTTTTTTCACTAGGAAACCTGACTCATTTGGGTCATCTATGTTGGTGAACAACAATAATTTGTCTCTGGCCTATGATGTCAAAGATCTTCTTTATGAGGAAGGCATGGAAGTACTTACAAAGAGAAGGGCAGAAAATATAAAAAAGATTGAAGGTTTACTGGCAGTGAACTTGGAGAGAAAAAGAATTAGGCCAGATCTTGTTTTGAGGCTGCAAATTGAAGAGAAAAAGCTTCGTCTTTTAGATCTTCAGGCACGACTGAGGGATGAGATTGATCAGCAGCAACAAGAGATAATGGCAATGTTAGATAGGCCATATCGTAAGTTTGTTAGACTGTGTGAGCGTCAACGTATTGAACTTGCTAGACAAGTGCAAGCCTCTCAGAAAGCTCTACGGGAGAAACAACTCAAATCTATATTTCAGTGGCGTAAGAAGCTTCTTGAGGCACATTGGGCTGTACGTGATGCTCGAATTGCCCGCAACAGGGGTGTGGGCAAATATCATGAGAGAATGTTGAGGGAATTCTCAAAGCGTAAAGATGATGATAGGAACAAAAGGATGGAAGCCTTGAAAAATAATGATGTTGACCGATACAGGGAGATGTTGTTAGAGCAGCAGACTAGCCTCCCCGGTGACGCTGCAGAGAGATATGCTGTGCTTTCATCCTTCTTAACTCAGACTGAGGACTATTTACAAAAATTGGGAAGTAAAATAACAGCTGCCAAAAATCAGCAGGAAGTGGAGGAGGCTGCAAGAACCGCTGCAGCTGCAGCACGATTGCAGGGTCTTTCTGAAGAAGAAGTCAGAGCAGCTGCAGCTTGTGCTGGGGAGGAAGTGATGATTAGAAATCGTTTTATGGAGATGAATGCTCCTAAAGACAGTTCATCTGTCAGCAAGTATTACAGCCTTGCTCATGCCGTGAATGAAAAGGTCCTAAGGCAGCCATCTATGTTACGAGCAGGAACCTTGAGAGATTATCAACTTGTTGGCTTGCAGTGGATGCTTTCATTGTATAACAACAAGTTAAATGGAATTTTAGCAGATGAGATGGGTCTTGGTAAAACTGTGCAGGTTATGGCCTTGATTGCCTACTTGATGGAATTTAAAGGAAATTACGGCCCACATCTTATAATTGTTCCAAATGCAGTTCTGGTTAACTGGAAGAGTGAGTTGTATAATTGGTTACCCTCTGTGTCATGCATTTTTTATGTTGGAGGGAAGGACCAACGGTCAAAATTATTTTCTCAAGAGGTTTCTGCCATGAAATTTAATGTCCTTGTTACAACTTATGAGTTCATCATGTATGACCGGTCCAAATTGTCAAAAATTGATTGGAAGTATATCATAATTGATGAAGCACAAAGAATGAAGGATAGGGATTCAGTTCTAGCTCGTGATCTTGATAGATACCGTTGTCAGAGACGTCTTCTTCTGACAGGAACACCATTGCAGAATGATCTGAAGGAACTCTGGTCACTTTTAAATTTACTTCTTCCTGAGGTTTTTGATAATCGAAAAGCATTTCATGATTGGTTTTCAAAACCTTTTCAAAAGGAAGATCCTACTCAAATTGTAGAGGATGACTGGCTTGAGACAGAAAAGAAAGTTATCATTATTCATAGACTTCATCAGATTCTTGAGCCTTTCATGCTTAGGCGTCGTGTTGAAGATGTTGAAGGCTCACTACCACCAAAGGTCTCCATAGTTTTACGATGTAGAATGTCAGCTATTCAGAGTGCCATTTATGACTGGATCAAATTCACTGGTACCCTTCGGCTTGATCCTGAGGATGAGAAGCTTAGAGTTCAAAAGAATCCACTTTACCAGGTGAAGCAGTATAAAACTTTAAATAATAGATGCATGGAGCTGCGCAAGACCTGCAATCATCCATTGCTTAATTACCCATACTTCCATGACTTGTCCAAAGATTTCCTTCTAAAATCTTGTGGGAAATTGTGGATCCTTGATAGGATCCTTATTAAACTGCATCGAACTGGACATCGAGTTCTGCTGTTTAGTACTATGACAAAACTTCTAGACATTATAGAAGAATACCTGCAGTGGCGACGGCTTGTTTATAGAAGAATTGATGGGACAACTAGTTTGGAAGACCGTGAAACAGCTATAGTGGACTTTAATAGCCCAGGTTCAGATTGTTTCATCTTCTTGCTTAGTATTAGAGCTGCTGGAAGAGGCCTTAACCTTCAGTCTGCAGACACAGTCATCATATATGATCCTGATCCAAACCCAAAAAATGAGGAGCAGGCAGTTGCGAGAGCTCATCGCATTGGACAGACTAGAGAAGTCAAGGTTATCTACATGGAAGCTGTTGTTGACCAAATTCCCAGCCATCAAAAAGAGGATGAACATAGAAGTGGGGGCACTGTCAATTTGGAGGATGAGCTTGCAGGCAAGGATCGTTATATGGGATCCATTGAGAGCCTCATTAGGAACAATATTCAACAATACAAGATTGATATGGCCGATGAGGTCATCAATGCCGGACGTTTTGATCAAAGAACTACACATGAGGAGAGACGTATGACTTTGGAGACATTATTACATGATGAAGAAAGGTATCAAGAAACTGTCCATGATGTTCCCTCACTACAGGAGGTGAATCGCATGATTGCTAGGAGTGAAGAAGAACTCGAGCTGTTTGATCAAATGGATGAAGAACTAGATTGGACTGAGGAGATGACACGGTATGATCAGGTGCCTAAGTGGCTTAGAGCCAGTACAAGAGAAGTCAATGCCACTATTGCTGCATTATCAAAAAGACCTTCAAAGAACACTTTCTTGAGTGGTAGTATCGCTGTGGAATCCAATGAAATGGGTTCTGATGCATCTGCAAAAACTGAAAGGAGAAGAGGTCGACCCAAGGGGAAAAAGCATCCTAGTTATAAAGAGTTAGAAGATGAAAATGGGGAATCCTCTGAAGCAAGTTCTGGAGAAAGAAATGGATATTCTGCAAATGAAGAAGGGGAAATAGGAGAATTTGAAGATGATGGGTATAGTGGTGATGATGGAGCTCAACTAAATAATAAAGATCAAATGGATGATGGTCCACTTTGTGATGCAGGATATGAATTTCCTCGTTCCTCAGAAAGCATGAGAAACAGTCATATGGTTGAAGAAGCTGCTTCTTCAGGATCATCCTCAGACAGTCAAAGATTGACAGAGACTATATTTCCTTCAGTTTCCCCTCAGAAATTTGGTTCCCTCTCTGCATTAGATTCTAGGCCAAGTTCCATTTCCAAAAGGGTGGCAGATGACTTAGAGGAAGGGGAAATTGCAGTATCCGGTGATTCTCACATGGATCACCAGCAATCTGGCAGTTGGATTCATGATCGCGATGAAGGAGAAGATGAACAAGTTTTGCAGCCCAAATTTAGACGTAAGCGCAGTCGCCGTGTTCGACCACGTCATGCTACGGACAGGGTTGAGGAAAAGTCTAGCAGTGAGATGACATCTCATCAACATGGAGAATCAGGTTATTTGGCTGTCCAAGCAGACTGTAAATATCGTGCACAATCACGGACTGACCCAGATGTAAAATCACGTGGAGAATTTAATGCTGCCTTGCATGATCAGAATGAGTCATTGTTAAAAAATAAGCGAAGTTTGCCTTCAAAGAGAGTAACTTATAAATTGCGTGGTTCACCTAAATCTGGTAGATTGAACTGTATTTCTGCCCCTTCAGAGGATGGTGGTGAACAACTCAGAGAGAAGTGGGAGGGCAAGCCTATCAATTCAAGTGGGCCTTCAGCTATTGATGCTAAAATGTCTGAAATAGTCCAGAGAAAGTGCAAGAATGTAATTAGCAAGTTTCAAAGGAGAATAGATAAGGAAGGTCATCAAATTGTGCCTTTGCTTACTGACTTGTGGAAGAAGAATTCTGGACACACTGGTGGATGTGGGAATAATTGGTTGGACATACAGAAGATTGATCAGCGAATTGATAGGTTTGAATATAATGGAGTATTGGAGCTTGTGTGTGATGTGCAGTTCATGTTGAAGTGTGCGATGGATTTCTATGGGTTCTCACATGAGGTAAGATCTGAAGCAAGGAAGGTCCATGATCTCTTTTTTGAAATCTTGAAAGTTGCATTTCCTGATACGGACTTCCAAGGGCCAAGAATTGCACTTTCTTTTGCTGCACCAACTTCCGTCAGTACTCTAACATCCCCGAGGCACTTGGCTGGGAGCCAAAGCAGAAGACACAAGATGATAAATGAGGTGGAAAATGATCCAAGCCCTTCACAGAAGCAACTGCATCGGGGTTTTATTCCAAGCGGCGAAAGCACCAGGATCAGAGTGCAGCTGCCACCGAAGGATTCAAGAACTGGAACAGCTTCTGGCAGTGCAAGAGAGCAAATACAGCAGGATGATTCTCTGATTCTCACTCATCCAGGTGAACTGGTAGTATGCAAAAAGAGAAGAAATGAGAGGGACAAGTCCACAGGGAAGACTAGGGGTGGCTCAGCCGGACCTGTTTCACCGCCTAGCTCTGGTCCTGCTATAAGAAGTCCAGGACCGAGTTCAGGTTCAAAGGATGCTAGACTAGGTCAACAGCCTGCTCAAGGGTGGACGCGCCAATCATCTCAACAACCGAACGGGTCTGACAGTTGGGCGAATCCTGTGAAGCGATTGAGGACAGGTAAAAGGAGGCGCCATCAATAG 6693 0.4363 MQSTGPGSGGPCRNPGVGPAGRAASSAASQSSPSSAVSTSHLGLDTLQQQQHQQIGSRQSLQQQLLRKPEGNETFLAYQAGLQGVYGTNNFSSPSPVQLPQQSRKSIDFTQHGPSQEAQIRGQGMEQQMPNPVHQAYLQIALKAAQQKSALAMQSQQQTKMGMFGSSTVKDQEMRMGNLKMQELIPLQAVNQAHCSTPRNSSEQFSRGEKQIDQGQHQAMDHKSEGKSSTQGPVIGHIMPGNMIRPMQAPTTPQGIHNSVNNQMVVSAQLHALQAWAHERNIDLSHPANANLMAQLIPMMQSKMASQQKPNENNVAPQSSPVPVSKQQVTSPMENPSHANSSSDLSGKSGCAKARQTVPPSHFVPPTNTGTASSGSDVAVQQINIHGRESQASLRQPGAVGNGLPPMHPQQFSANMNHVADHPLNAKKLLPGPDLPQVPHMRQLNQSSAQTTGSTNEGTSGNNVKPLGTPTQIPQQRPGFTKQQLHVLKAQILALRRLKKGEGALPQELLQAIVPPPLELQLQQTIHPAGGQNIEKSAGNTVAEHPRQIESKTKDIQSVPAINAPSSSKQEASSRDEKSTAPTVHMQTMPVVPKETASVGKEELHSMMSDQENDRGINRTPVRTELPLDRGKAIVPHDTVQLNKPAQTSSVTQPKDMASTRKYHGPLFDFPFFTRKPDSFGSSMLVNNNNLSLAYDVKDLLYEEGMEVLTKRRAENIKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDLQARLRDEIDQQQQEIMAMLDRPYRKFVRLCERQRIELARQVQASQKALREKQLKSIFQWRKKLLEAHWAVRDARIARNRGVGKYHERMLREFSKRKDDDRNKRMEALKNNDVDRYREMLLEQQTSLPGDAAERYAVLSSFLTQTEDYLQKLGSKITAAKNQQEVEEAARTAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFMEMNAPKDSSSVSKYYSLAHAVNEKVLRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELYNWLPSVSCIFYVGGKDQRSKLFSQEVSAMKFNVLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEDPTQIVEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKFTGTLRLDPEDEKLRVQKNPLYQVKQYKTLNNRCMELRKTCNHPLLNYPYFHDLSKDFLLKSCGKLWILDRILIKLHRTGHRVLLFSTMTKLLDIIEEYLQWRRLVYRRIDGTTSLEDRETAIVDFNSPGSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVDQIPSHQKEDEHRSGGTVNLEDELAGKDRYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEEELELFDQMDEELDWTEEMTRYDQVPKWLRASTREVNATIAALSKRPSKNTFLSGSIAVESNEMGSDASAKTERRRGRPKGKKHPSYKELEDENGESSEASSGERNGYSANEEGEIGEFEDDGYSGDDGAQLNNKDQMDDGPLCDAGYEFPRSSESMRNSHMVEEAASSGSSSDSQRLTETIFPSVSPQKFGSLSALDSRPSSISKRVADDLEEGEIAVSGDSHMDHQQSGSWIHDRDEGEDEQVLQPKFRRKRSRRVRPRHATDRVEEKSSSEMTSHQHGESGYLAVQADCKYRAQSRTDPDVKSRGEFNAALHDQNESLLKNKRSLPSKRVTYKLRGSPKSGRLNCISAPSEDGGEQLREKWEGKPINSSGPSAIDAKMSEIVQRKCKNVISKFQRRIDKEGHQIVPLLTDLWKKNSGHTGGCGNNWLDIQKIDQRIDRFEYNGVLELVCDVQFMLKCAMDFYGFSHEVRSEARKVHDLFFEILKVAFPDTDFQGPRIALSFAAPTSVSTLTSPRHLAGSQSRRHKMINEVENDPSPSQKQLHRGFIPSGESTRIRVQLPPKDSRTGTASGSAREQIQQDDSLILTHPGELVVCKKRRNERDKSTGKTRGGSAGPVSPPSSGPAIRSPGPSSGSKDARLGQQPAQGWTRQSSQQPNGSDSWANPVKRLRTGKRRRHQ 2230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0136 2230 SMART ultradead3 989 1178 IPR014001 -
Alju11g0136 2230 MobiDBLite consensus disorder prediction 553 570 - -
Alju11g0136 2230 FunFam ATP-dependent helicase BRM 1233 1443 - -
Alju11g0136 2230 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1005 1170 IPR014001 -
Alju11g0136 2230 MobiDBLite consensus disorder prediction 196 233 - -
Alju11g0136 2230 SMART bromo_6 1933 2042 IPR001487 GO:0005515
Alju11g0136 2230 ProSiteProfiles QLQ domain profile. 479 515 IPR014978 GO:0005524|GO:0005634|GO:0006355
Alju11g0136 2230 MobiDBLite consensus disorder prediction 445 469 - -
Alju11g0136 2230 MobiDBLite consensus disorder prediction 389 413 - -
Alju11g0136 2230 MobiDBLite consensus disorder prediction 1635 1650 - -
Alju11g0136 2230 Gene3D - 984 1232 IPR038718 -
Alju11g0136 2230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1227 1564 IPR027417 -
Alju11g0136 2230 SMART helicmild6 1350 1434 IPR001650 -
Alju11g0136 2230 Pfam QLQ 480 513 IPR014978 GO:0005524|GO:0005634|GO:0006355
Alju11g0136 2230 MobiDBLite consensus disorder prediction 196 213 - -
Alju11g0136 2230 PANTHER SNF2/RAD54 HELICASE FAMILY 739 1788 - -
Alju11g0136 2230 FunFam Brahma1 1931 2052 - -
Alju11g0136 2230 MobiDBLite consensus disorder prediction 534 588 - -
Alju11g0136 2230 MobiDBLite consensus disorder prediction 2084 2230 - -
Alju11g0136 2230 FunFam ATP-dependent helicase BRM 984 1232 - -
Alju11g0136 2230 MobiDBLite consensus disorder prediction 2144 2160 - -
Alju11g0136 2230 MobiDBLite consensus disorder prediction 1704 1753 - -
Alju11g0136 2230 MobiDBLite consensus disorder prediction 302 350 - -
Alju11g0136 2230 CDD SF2_C_SNF 1319 1444 - -
Alju11g0136 2230 Pfam Helicase conserved C-terminal domain 1323 1434 IPR001650 -
Alju11g0136 2230 MobiDBLite consensus disorder prediction 1 42 - -
Alju11g0136 2230 MobiDBLite consensus disorder prediction 24 42 - -
Alju11g0136 2230 Coils Coil 743 774 - -
Alju11g0136 2230 MobiDBLite consensus disorder prediction 1768 1834 - -
Alju11g0136 2230 MobiDBLite consensus disorder prediction 361 376 - -
Alju11g0136 2230 Coils Coil 1540 1560 - -
Alju11g0136 2230 Pfam SNF2-related domain 996 1300 IPR000330 GO:0005524|GO:0140658
Alju11g0136 2230 MobiDBLite consensus disorder prediction 2187 2216 - -
Alju11g0136 2230 MobiDBLite consensus disorder prediction 302 376 - -
Alju11g0136 2230 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1324 1501 IPR001650 -
Alju11g0136 2230 Gene3D - 795 868 - -
Alju11g0136 2230 MobiDBLite consensus disorder prediction 2116 2136 - -
Alju11g0136 2230 SUPERFAMILY Bromodomain 1982 2043 IPR036427 GO:0005515
Alju11g0136 2230 Gene3D - 1233 1442 IPR027417 -
Alju11g0136 2230 MobiDBLite consensus disorder prediction 1614 1753 - -
Alju11g0136 2230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 972 1223 IPR027417 -
Alju11g0136 2230 MobiDBLite consensus disorder prediction 1780 1800 - -
Alju11g0136 2230 MobiDBLite consensus disorder prediction 2085 2099 - -
Alju11g0136 2230 SMART QLQ_2 478 515 IPR014978 GO:0005524|GO:0005634|GO:0006355
Alju11g0136 2230 Gene3D - 1930 2056 IPR036427 GO:0005515
Alju11g0136 2230 MobiDBLite consensus disorder prediction 1812 1827 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0136 Alju-ChrAlju11 1299031 1310575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0136 1014 1459 RAD5 or RAD16-like Gene Family AT1G02670 25.862 2.84e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju11g0136 SNF2_N 1.5e-64 CL0023