Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0110 ATGGATCGGGGGGACCAAATGGCGTTATCTGGGTCTGCATCTTACTATATGCAGAGGGGAATGGCTGGTTCTGCCGGACAGCCTGAGCTCCATGGTTCCCCAACTATTCACCAACTTTCTAATTCCAATCTATCATTTCAACCCAACATTGGTGGGGGTACTCTTGGATCCACGCTACCATTAGAATCTTCAGCCATTTCCCCTCATGGTGTTAATGTAGGCGCTCCATCTGGAGTGCCATCTGGGGAACCTGTCAAAAGGAAGAGAGGTAGGCCTAGGAAATATGGTCCAGATGGAAATGTGTCATTGGCATTGACTCCCCTGTCGTCTAATCATCCCGGAAGTGGTCATTCTGGTAGTGTAGCTGTGACACACAGCCAAAAGAGGGGTAGAGGGCGCCCACCAGGGTCTGGCAAGAAACAGCAGTTGGCTTCTCTTGGTGAATTGATGTCTGGTTCAGCTGGAATGGGTTTCACTCCTCATATCATCACCATTGCAGTTGGAGAAGATATTGTGTCAAAAATAATGGCATTCTCCCAGCAAGGGTCTAGAGCCGTGTGTGTATTGTCGGCCAATGGTGCTGTTTCAAATGTGACTCTTCGTCAGCCTTCGTCGTTGGGTGGTTCTGTTACATATGAGGGGCGTTATGAGATATTGTGCCTGTCAGGCTCGTACTTGCTTAGTGATAGTGGGGGCTCGCGCAATCGATCCGGTGGATTGAGTGTCTCTCTTGCTAGTCCTGAGGGTAAAATCATTGGTGGAGGAGTCTGTGGAATGCTTATTGCAGCATGTCCCGTTCAGGTGATAGTTGGGAGCTTTTTATGGGGTGTATCGAAGACCAAGAACAAGAAAAAAGAAGTTGAAGAGGTTCCTGTGGAGTCGGATCATCAGGCAGTTCATAATCCAGTTGCGATGAATAACATTATGGCCAATCAGAATCTCACCCCACCGTCTTCTATCGGTACATGGCCGGCATCTCGTACCATGGATATGCGCAATTCCCATGTTGACATTGATTTAATGCGTGGGTGA 1032 0.4845 MDRGDQMALSGSASYYMQRGMAGSAGQPELHGSPTIHQLSNSNLSFQPNIGGGTLGSTLPLESSAISPHGVNVGAPSGVPSGEPVKRKRGRPRKYGPDGNVSLALTPLSSNHPGSGHSGSVAVTHSQKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHIITIAVGEDIVSKIMAFSQQGSRAVCVLSANGAVSNVTLRQPSSLGGSVTYEGRYEILCLSGSYLLSDSGGSRNRSGGLSVSLASPEGKIIGGGVCGMLIAACPVQVIVGSFLWGVSKTKNKKKEVEEVPVESDHQAVHNPVAMNNIMANQNLTPPSSIGTWPASRTMDMRNSHVDIDLMRG 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0110 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 65 310 IPR039605 GO:0003680
Alju11g0110 343 CDD DUF296 159 273 IPR005175 -
Alju11g0110 343 MobiDBLite consensus disorder prediction 20 143 - -
Alju11g0110 343 ProSiteProfiles PPC domain profile profile. 154 298 IPR005175 -
Alju11g0110 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 160 273 IPR005175 -
Alju11g0110 343 MobiDBLite consensus disorder prediction 31 65 - -
Alju11g0110 343 FunFam AT-hook motif nuclear-localized protein 1-like 160 290 - -
Alju11g0110 343 Gene3D - 160 300 - -
Alju11g0110 343 MobiDBLite consensus disorder prediction 103 125 - -
Alju11g0110 343 SMART AT_hook_2 128 140 IPR017956 GO:0003677
Alju11g0110 343 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Alju11g0110 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 158 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0110 Alju-ChrAlju11 1041916 1047525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0110 1 343 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 48.774 3.85e-87 265