Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0100 ATGAACAATAGAGCTAGATATCCACCTGGGATTGGCGTAGGTCGAGGGGGAGGTATGAACTCGAACCCTGGGTTTCAACCGCGACCCCCTCTGCAACAGTATGTGCAAAGGCATTTAGTGCAGAATCAACAGCAGTATCAACATCAGTATCAGCAGCATCAACAGCAACATCAGCAGTTACAACAGCAGCAGCAACAACAACAATGGCTTAGAAGAACGCAATTAAGTGGCACTGATTCTAATGTAGTTGACGAGGTCGAGAAGACTGTGCAGTCTGAAGCCGTTGATTCAAGTTCTCAAGATTGGAAGGCAAGATTAAAGATACCACCACCTGATACTCGCTATAGGACTGAGGATGTGACAGCAACTAAGGGAAATGAATTTGAAGATTACTTTTTGAAGCGCGAACTGCTTATGGGAATATATGAGAAGGGTTTCGAAAGGCCTTCTCCTATTCAGGAAGAAAGTATCCCAATTGCTCTTACTGGTAGTGATATTCTTGCTAGAGCAAAAAATGGAACGGGAAAAACAGCTGCCTTTTGCATTCCTGCTCTAGAAAAAATTGATCAGGATAACAATGTTATTCAAGCTGTTATACTGGTCCCAACACGTGAATTGGCTTTGCAAACATCACAAGTGTGTAAAGAGCTGGGAAAGCATCTGAAAATTCAAGTCATGGTTACAACAGGGGGTACCAGCCTGAAAGATGATATCATGCGATTATATCAACCTGTTCATTTACTTGTTGGAACCCCAGGAAGAATATTAGATCTTGCGAAGAAGGGTGTCTGCATTTTGAAAGACTGTAGTGTGCTTGTTATGGATGAGGCTGATAAGCTTTTGTCACCGGAGTTCCAACCTTCAATAGAGCAATTGATTCATTTCCTGCCTCCAAACCGTCAAATCCTGATGTTTTCAGCTACTTTTCCTGTTACTGTAAAGGACTTCAAAGATAGATTTCTTCAGAAACCATATATCATTAACCTTATGGATGAGTTAACTCTGAAAGGTATTACACAATTTTATGCATTCGTGGAAGAGAGACAGAAAGTCCACTGCCTCAATACACTTTTCTCTAAGCTGCAAATAAATCAGTCAATTATATTCTGCAATTCGGTGAATCGGGTTGAGCTCCTTGCCAAGAAAATTACAGAACTAGGCTATTCATGCTTCTACATCCACGCAAAGATGCTGCAAGATCATCGTAACAGAGTATTTCATGACTTCCGCAATGGTGCTTGTAGAAATCTTGTCTGTACTGATCTTTTTACCAGGGGAATAGACATTCAAGCAGTTAATGTGGTCATTAATTTTGATTTTCCCAAGAATTCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGAAGGTTTGGGCACCTTGGTCTTGCAGTTAACTTGATCACCTATGAGGATCGCTTTAATTTATATAGGATCGAGCAAGAACTTGGCACTGAAATAAAGCAAATTCCACCACACATTGATCAGGCAATTTATTGCCGGTGA 1503 0.4105 MNNRARYPPGIGVGRGGGMNSNPGFQPRPPLQQYVQRHLVQNQQQYQHQYQQHQQQHQQLQQQQQQQQWLRRTQLSGTDSNVVDEVEKTVQSEAVDSSSQDWKARLKIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQAVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSVLVMDEADKLLSPEFQPSIEQLIHFLPPNRQILMFSATFPVTVKDFKDRFLQKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0100 500 Gene3D - 331 500 IPR027417 -
Alju11g0100 500 Gene3D - 82 330 IPR027417 -
Alju11g0100 500 MobiDBLite consensus disorder prediction 89 110 - -
Alju11g0100 500 Pfam DEAD/DEAH box helicase 151 315 IPR011545 GO:0003676|GO:0005524
Alju11g0100 500 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 61 499 - -
Alju11g0100 500 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 273 281 IPR000629 -
Alju11g0100 500 Pfam Helicase conserved C-terminal domain 352 458 IPR001650 -
Alju11g0100 500 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 327 IPR014001 -
Alju11g0100 500 CDD DEADc_DDX6 128 328 - -
Alju11g0100 500 SMART helicmild6 377 458 IPR001650 -
Alju11g0100 500 Coils Coil 43 70 - -
Alju11g0100 500 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 337 497 IPR001650 -
Alju11g0100 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 480 IPR027417 -
Alju11g0100 500 FunFam ATP-dependent RNA helicase DDX6 107 330 - -
Alju11g0100 500 CDD SF2_C_DEAD 338 467 - -
Alju11g0100 500 SMART ultradead3 145 341 IPR014001 -
Alju11g0100 500 MobiDBLite consensus disorder prediction 1 30 - -
Alju11g0100 500 FunFam ATP-dependent RNA helicase DDX6 331 500 - -
Alju11g0100 500 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 126 154 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0100 Alju-ChrAlju11 990901 995888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0100 126 497 Eukaryotic Initiation Factors Gene Family AT3G19760 39.037 5.14e-97 297