Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0094 ATGGCAAAATATGTTCAAGTCTGGAACTTACTTTACTTGAAGCAAGCCAGTATAGTCTTTTTGATAGAAATGGCATTTACAGGAACGTTGGATAAATGCAATGTATGTGATAAGACTGTGTATGTGGTGGACCTGTTGTCTCTTGAGGGTCTTCCTTACCATAAAACTTGTTTTAAATGCAGTCATTGCAAGGGGTTCCTTACGATGGGTACCTACTCCTCGATGGATGGTGTTCTCTATTGCAAGCCTCATTTTGAGCAGCTTTTCAAGGAATCTGGAAATTTCAGCAAGAACTTTCACACAGCAAAGTCTTCTGAAAAATCACATGACACGAGCAAGAACACAAACAAACTCTCTTCATTGTTTAGTGGAACCCAAGACAAATGTGCCGTTTGCACTAAAACGGTCTATCCTCTAGAAAAGGTGACACTAGAAGGAGAGAGCTACCACAAGACATGCTTTAGGTGTGCTCATGCAGGGTGTCCTCTCACACACTCCTCCTATGCAGCTCTTGATGGAGTCCTGTATTGCAGGCACCACTTTGCTCAACTTTTCATGGAGAAAGGTGATTACAACCATGTCAAGGAAGTCACTGCTAACAAAAAGAACTCTGCTTCTCATGATCAGCTTCCAGATGAACATCCATCTCAGGACCAGGATGACACTGAACACGACGATAAAGAAGAAGTTGAAGATGAATGA 702 0.4202 MAKYVQVWNLLYLKQASIVFLIEMAFTGTLDKCNVCDKTVYVVDLLSLEGLPYHKTCFKCSHCKGFLTMGTYSSMDGVLYCKPHFEQLFKESGNFSKNFHTAKSSEKSHDTSKNTNKLSSLFSGTQDKCAVCTKTVYPLEKVTLEGESYHKTCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGDYNHVKEVTANKKNSASHDQLPDEHPSQDQDDTEHDDKEEVEDE 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0094 233 ProSiteProfiles LIM domain profile. 31 91 IPR001781 -
Alju11g0094 233 FunFam LIM domain and actin-binding 1 123 193 - -
Alju11g0094 233 MobiDBLite consensus disorder prediction 197 233 - -
Alju11g0094 233 Pfam LIM domain 33 88 IPR001781 -
Alju11g0094 233 Pfam LIM domain 129 184 IPR001781 -
Alju11g0094 233 Gene3D Cysteine Rich Protein 29 97 - -
Alju11g0094 233 Gene3D Cysteine Rich Protein 123 193 - -
Alju11g0094 233 PANTHER OS06G0237300 PROTEIN 28 127 - -
Alju11g0094 233 ProSitePatterns LIM zinc-binding domain signature. 33 67 IPR001781 -
Alju11g0094 233 MobiDBLite consensus disorder prediction 197 221 - -
Alju11g0094 233 SMART lim_4 128 180 IPR001781 -
Alju11g0094 233 SMART lim_4 32 84 IPR001781 -
Alju11g0094 233 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 121 154 - -
Alju11g0094 233 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 25 58 - -
Alju11g0094 233 ProSiteProfiles LIM domain profile. 127 187 IPR001781 -
Alju11g0094 233 FunFam LIM domain and actin-binding 1 27 97 - -
Alju11g0094 233 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 155 194 - -
Alju11g0094 233 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 59 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0094 Alju-ChrAlju11 957947 961001 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Alju11g0094 LIM 3.2e-11 CL0167