Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0046 ATGGGTAGAGGGAGGGTTGAACTGAAGATGATAGAGAACAAAATCAACAGGCAAGTGACTTTCTCCAAAAGAAGGAACGGCCTCATGAAGAAAGCTCATGAACTGTCTGTGCTTTGTGATGCTGAGGTTGCTCTCATTATTTTCTCTGGTCGTGGCAAGCTCTATGAATTCGGCAGTGCTGGCATGACTAAAACCCTGGAACGGTATCAGAGGTGCACTTTTACTTCTCAGGAGCCCAATATTGTTGAGCTTGAAACCCAGAGCTGGTGCGAAGAGTTGGCAAAGCTAAGGGCAAAGTATGAGTCTCTTCAGAGGACTCAAAGGCATTTGCTGGGGGAAGATCTGGGGCCACTGAGTGTGAAAGAGCTTCAGGATCTAGAGAAGCAGCTTGAAAGAGCCCTGGCCGAAGCAAGGCAAAGGAAGACGGAGATAATGATAGAAGAAATGGAACATCTACGCAGAAAGGAACGGCATCTGGGAAACATGAATGAGCAGCTGAAACAGAGGGTTAATAATGTAAAATGCTTAGACACCTTCTGGAGCTACCCTTCTCATTCTCACTCTGCTGCACCGTCTACTTCTGCTGCCAACCCCAACAACAACTTTCTCTCCCACCCTAACCCTCTCCTCGATTCCCTCCAAATTGGCTACCATCATCATCAGCACCACGAGTATGCTGAAGCAGAGACATCTAACCATCATGCTCCCAACAAACCCACCATGCTTGCTGAGACTAACTTCGTGCAGGGATGGCTCCTTTGA 762 0.4777 MGRGRVELKMIENKINRQVTFSKRRNGLMKKAHELSVLCDAEVALIIFSGRGKLYEFGSAGMTKTLERYQRCTFTSQEPNIVELETQSWCEELAKLRAKYESLQRTQRHLLGEDLGPLSVKELQDLEKQLERALAEARQRKTEIMIEEMEHLRRKERHLGNMNEQLKQRVNNVKCLDTFWSYPSHSHSAAPSTSAANPNNNFLSHPNPLLDSLQIGYHHHQHHEYAEAETSNHHAPNKPTMLAETNFVQGWLL 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0046 253 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Alju11g0046 253 Coils Coil 149 169 - -
Alju11g0046 253 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju11g0046 253 MobiDBLite consensus disorder prediction 186 207 - -
Alju11g0046 253 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Alju11g0046 253 Coils Coil 120 147 - -
Alju11g0046 253 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Alju11g0046 253 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 198 - -
Alju11g0046 253 FunFam MADS-box transcription factor 1 13 87 - -
Alju11g0046 253 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju11g0046 253 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju11g0046 253 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju11g0046 253 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju11g0046 253 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju11g0046 253 Coils Coil 86 113 - -
Alju11g0046 253 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju11g0046 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Alju11g0046 253 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0046 Alju-ChrAlju11 521326 524693 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0046 1 253 MADS-box Gene Family AT2G45650 57.895 2.91e-95 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju11g0046 K-box 9.6e-29 No_clan