Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0044 ATGGTGCGAGGGAAGACTGAGATGAGGCGTATAGAGAACGCCACGAGCAGGCAAGTGACCTTCTCAAAACGCCGCAATGGGCTGCTCAAGAAGGCCTTTGAACTCTCAGTGCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTCCCAGAGGCAAGCTTTATGAATTTTCTAGCTCCAGCTTGGAGGAAACAATTGAACGCTACCGCAAGCATACAAGGGATACTCAGACAGCCACCAGATTTAGTGAACAAAATATGCAGCATTTGAAGCAAGAAGCAGCAGGCATGATGAAGAAAATTGAGCTTCTTGAGCTTACCAAACGGAAACTCTTGGGGGAAGGTTTAGGGTCATGCTCCATGCAAGAGTTAAACCAGATAGAACAACAGTTGGAGAAGAGTGTGAGAACCATTCGAGCAAGAAAGACTCAGGCTTACAACGAACAGATCGAGCAACTAAAAGCAAAGGAAAAAGTCCTAGAAGCTGAAAATGCAAGGCTCTCTGAGAAGTGTGGTAAACTGGCAGAGCAAGCAACAAATGGTGAGCAGCAGAGAGAAAGTCAACCCTATGCAGAAAGCAGTCCAAGTTCAGATGTGGAAACAGAGTTATTCATTGGATTAACCAGAGCAAGACGAAGCCTTCTGCCTCCTCTGCCTCCAAGACCTGCCCAAGCAGCCACCTGCAAGAAGTTGGAGGAGGAAGGAGGACTTTGCAGGGAAGAAAAGTCTGCAGGTGGCTATTCGGGTGTGTTTTCTGATTTAGAAGGCTTTGTTTCAGAGTTTGCTCAAATTCTCAACTTGTTTCCTTTTGATGATACTCACATTCAAAGGATATGA 837 0.4588 MVRGKTEMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSLEETIERYRKHTRDTQTATRFSEQNMQHLKQEAAGMMKKIELLELTKRKLLGEGLGSCSMQELNQIEQQLEKSVRTIRARKTQAYNEQIEQLKAKEKVLEAENARLSEKCGKLAEQATNGEQQRESQPYAESSPSSDVETELFIGLTRARRSLLPPLPPRPAQAATCKKLEEEGGLCREEKSAGGYSGVFSDLEGFVSEFAQILNLFPFDDTHIQRI 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0044 278 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Alju11g0044 278 Coils Coil 121 141 - -
Alju11g0044 278 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju11g0044 278 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Alju11g0044 278 ProSiteProfiles K-box domain profile. 87 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju11g0044 278 Coils Coil 143 177 - -
Alju11g0044 278 FunFam MADS-box protein SOC1 14 95 - -
Alju11g0044 278 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 182 - -
Alju11g0044 278 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju11g0044 278 MobiDBLite consensus disorder prediction 177 198 - -
Alju11g0044 278 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju11g0044 278 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju11g0044 278 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju11g0044 278 Coils Coil 87 107 - -
Alju11g0044 278 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677|GO:0046983
Alju11g0044 278 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju11g0044 278 Pfam K-box region 83 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju11g0044 278 MobiDBLite consensus disorder prediction 176 198 - -
Alju11g0044 278 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0044 Alju-ChrAlju11 468054 487113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0044 1 158 MADS-box Gene Family AT2G45660 75.949 4.65e-84 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju11g0044 K-box 7.9e-26 No_clan