Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0023 ATGGCAGGAGGTGGAAGTAAGAAATCTGCTTCTGCAACTACGTCGCCGCCTTCATCATCAAATAATAACAATCAGCATCCAGCACAATCCAACAACAAGGCCACCGTGATCAAACGGTTCATAGGGGTCCGGCAGAGGCCGTCGGGACGATGGGTGGCCGAGATCAAGGACTCGTCTCAGCATGTCCGCCTCTGGCTCGGAACCTACGACACCCCAGAGGAGGCCGCCCAGGCCTACGACGAGGCAGCCCGGGCCCTCCGTGGCGACAACGCCCGAACCAACTTCGCCTCCTCCACCACCGCCACCACAACCAACGAAGGCCTATCAAAGCAAAGTGGATTGAGTTTTGCTTCTCTGAAAGCCAAGCTGAGCAAGAATCTTCAGAGCATAATGGCCAGGGCAAGCGATGGCAGCAGCAATAATAAAGCATCCAAGAGCAGGGTGACTGACCATTTTACCCTTGCCAGCATATTCCACAGAAGGACTAGTTCTAATAACTACGGACACTACAAGTTCAGCCCAATCCCTAATGATATGGTGGAGAAAGTGGTGCAGCCCAGTATAATAGTGCCACCTGTAGGGGATCTACCCGGTGCAGTTAGTTCGTGGGAGAGCTCAAGCGTATCAGATTGTAGCACCGAGTGGGTTGGGTTCCGACAACCTGGTTTGGACTCGGACGGGTCAGAAGCCGGGGAGCAACTGGGGCTTAATTTGGAGCAGCTGTTGGGTTGGGTGGATAGTCCGGATCGTGGTAATAACAATGAGTATGGAAGCAGGTTGATAAATGGAAGCGATGAACAAGATGAAGGATCGAGGAGCAAGAGGTTTAAGGTTTCTTCTTCAGTTCTTGTGCCTCCAACTTTCAGTGGCTCTCCAAATAGCAATGAATTTGGGTCTCCTCACAATTACAGCAGTGCTTATGGATCTCCATATAATAATATTGGCGGCAGGTGA 954 0.5157 MAGGGSKKSASATTSPPSSSNNNNQHPAQSNNKATVIKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAAQAYDEAARALRGDNARTNFASSTTATTTNEGLSKQSGLSFASLKAKLSKNLQSIMARASDGSSNNKASKSRVTDHFTLASIFHRRTSSNNYGHYKFSPIPNDMVEKVVQPSIIVPPVGDLPGAVSSWESSSVSDCSTEWVGFRQPGLDSDGSEAGEQLGLNLEQLLGWVDSPDRGNNNEYGSRLINGSDEQDEGSRSKRFKVSSSVLVPPTFSGSPNSNEFGSPHNYSSAYGSPYNNIGGR 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0023 317 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Alju11g0023 317 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Alju11g0023 317 Gene3D AP2/ERF domain 38 97 IPR036955 GO:0003700|GO:0006355
Alju11g0023 317 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Alju11g0023 317 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Alju11g0023 317 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Alju11g0023 317 FunFam ethylene-responsive transcription factor RAP2-11 38 97 - -
Alju11g0023 317 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
Alju11g0023 317 MobiDBLite consensus disorder prediction 247 317 - -
Alju11g0023 317 MobiDBLite consensus disorder prediction 276 317 - -
Alju11g0023 317 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 197 - -
Alju11g0023 317 MobiDBLite consensus disorder prediction 7 35 - -
Alju11g0023 317 CDD AP2 38 95 IPR001471 GO:0003700|GO:0006355
Alju11g0023 317 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0023 Alju-ChrAlju11 269776 270729 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0023 39 96 AP2-EREBP Transcription Factor Family AT5G19790 72.414 1.95e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju11g0023 AP2 6.6e-15 CL0081