Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0020 ATGCTGTCACTGTATAATGAGCTGCAGCAAGAACGTGATAGCAGAAGGTCAGGTGATTCAAAGAGATCTTCAACTAATATGAGACCGTCAAAGACATTGTTTGTCATAAATTTTGATCCTGTTCACACCAGGACAAGGGATTTAGAGAGGCACTTTGATCCCTATGGGAAAATATTGAATATAAGGATAAGAAGGAATTTTGCTTTTGTTCAGTATGAATCCCTGGAGGATGCGAGTAGAGCATTGGAGGCAACCAACATGAGCAAGTTACTGGATCGGGTTATAACAGTGGAGTATGCGATAAGAGATGATGATGACAGAAGAAATGGATACAGTCCTGATAGAAAAGGCCGTGACATATCCCCTGATGGGAGATATGGTCGCGGTAGATCACTTAGCCCTTATCGTAGAGGTAGGGGTAGCCCAGACTATGGCCATGGATCAAATCCAACTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGAACAAAACGAAAGCCCGTCAAATGGAAGATATGACAGCCAATCACCGCCACCCCGCCGTGGGTCCCGTTCCCCTGGAGAAGTTGAATAG 576 0.4514 MLSLYNELQQERDSRRSGDSKRSSTNMRPSKTLFVINFDPVHTRTRDLERHFDPYGKILNIRIRRNFAFVQYESLEDASRALEATNMSKLLDRVITVEYAIRDDDDRRNGYSPDRKGRDISPDGRYGRGRSLSPYRRGRGSPDYGHGSNPTSRPEPRGSPKYEQNESPSNGRYDSQSPPPRRGSRSPGEVE 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0020 191 Gene3D - 3 188 IPR012677 -
Alju11g0020 191 MobiDBLite consensus disorder prediction 162 182 - -
Alju11g0020 191 SMART rrm1_1 32 98 IPR000504 GO:0003723
Alju11g0020 191 SUPERFAMILY RNA-binding domain, RBD 19 108 IPR035979 GO:0003676
Alju11g0020 191 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 102 IPR000504 GO:0003723
Alju11g0020 191 MobiDBLite consensus disorder prediction 105 125 - -
Alju11g0020 191 FunFam Serine/arginine-rich splicing factor RS31 23 113 - -
Alju11g0020 191 MobiDBLite consensus disorder prediction 8 27 - -
Alju11g0020 191 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 95 IPR000504 GO:0003723
Alju11g0020 191 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 26 185 - -
Alju11g0020 191 MobiDBLite consensus disorder prediction 105 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0020 Alju-ChrAlju11 254104 254922 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0020 30 110 Eukaryotic Initiation Factors Gene Family AT1G49760 30.337 1.76e-06 45.8