Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g2318 ATGGGAGCTGTTAGCTTTGAAATTAGTAGAAATTCAGCTTTTGCTTTGCATTGTTATGGAAATTCGTTTTCTTCCGGGGTTACTGTATTTTGGAGACCCTTTCTTGGTACATCTTTGAACACGAGAAATGCAAGTAAAGGTCAAGTTTTTCATGCCCAAAAGCTCAATTACGAACCATTTTGTGCTTCGTTGAAGAGTGGCTTCGAAGCTGGGTTGATAAATGATGGTCTGCTTTCAAATAAATTAGAGTTTAAGCCATCATTCGATGATTATTTGAAGGAAATGGAGTCTGCCAGAACTGTCAAGGAAATGGAGTCCTTCAGAAATGTTAGGGTAAAGAAGCATACTACCAGTACTGAAAAACAGAAGAGGGAAAAGGTTATGTCGAGGAAACCAAGGTTGGAAGGAGTTGAAAGAAGTACAAAATCTGGAAAGCTTGCAGGGCGCGTTGATAAAGCAAATGAATTGGGAATTGCTGAAACAGTCATGGGCAAAGAAAGCTCGTCCGTACGTCATATTAATCTTAGAGCACGAGGAGCTAAAAGATTTGACCTTGAGTGTGATGGGGAAGAAAGCAAGCTTGATATTACTATGAAGGAGAAAAAGGAGGCTGAGGTAGTGGAAGACAAGTACCGGATTGATAGATCAAAACCTGATTCTGACAGAAATTTGATTAAAAGGGAACGTAGAAAGACAGGCAACAGCAAGGCCTCACTAAATTGGAATAGTAACTGTGGCAACACCGTAGAGGGGGAAGTCGGCCATAAAGTACATACACTAAAGACGGCAGGAGGAAAGGATGTTACAACCAGTCAAATATACTGCAACTCAAAAGGGAAAATGCCTATCATAAACAAAACTGTTGTTAGCAACAATATCGTGAAAATTGGACTTGAGAACAGCTACACAAAAAATGAGAACGCGGGAAAAGAAAATGGACCGGAAAATCTCAACTTGATTGGAAGCAGCAGATGTTATGATTATGACAACTTGGAGGTGGAAAGAACGGCATTTAAGACTTTTGAAGAGTACAATGGTGTTGTCAACAAGCCACAAGTTTCACACAAGGAAATGGAGGATAGAATCCAAAGGCTGGCAAATTTGCTGAATGGTGCTGATATAAATATTCCTGAATGGATCTTTTCTAAGATGATGAGAAGTGCAAAGATAAAATTTAATGATTATTCTATTGTGAGGGTTATCCAAAGATTGGGAAAACTAGGAAACTGGCAGCGGGTGATACAGGTCATTGAATGGCTTCAAAGACGTGAGCGTTTCAAATCCCATAAACTAAGGCATATATACACTGCCGCTCTTGATGCACTTGGAAAGGCAAGGAGACCCATAGAGGCACTAAATGTATTTCATGCCATGCTGCAACAAATGTCCACATATCCTGATTTGGTAGCTTACCATAGTATTGCTGTCACTCTTGGACAAGCAGGGTGCATGAAGGAACTCTTTGATGTGATTGATATTATGCAGTTGCCACCTAAGAAGAAGTTCAAAGTAGGAGCACTTGGGAACTGGGACCCTAGGCTGGAACCGGATGTCATAGTTTATAATGCTGTCCTCAATGGTTGTGTTCAGCAGAAACAGTGGGAAGGGGCTTTCTGGGTTTTAGAGCAATTAAAGAAGCAACGTCAACAACCTTCTGCTACAACTTTTGGCCTTGTCATGGAGGTGATGTTTACATGTGGCAAGTACAATCTAGTTCATGAATTTTTCATGAAAGTTCAGAAGTTTTCTATTCCCAATTCGTTGACATATAGAGTTCTTGTGAATACACTATGGAAAGAGGGCAAAACTGATGAGGCTATATTGGCTGTGCAAGATATGGAAAGACGTGAAATTGTAGGCTCTGCTTCTCTTTACTATGACCTTGCTCGATGTCTTTGTGCAGCTGGAAGATGTAGTGAGGCACTGACGCAGATAGAGAAGATATGTAAGGTTGCAAACAAGCCGCTTGTAGTGACATACACTGGCTTAATTCAAGCATGTCTGGAATCTGGAAACATCCAAGATGGGGCATACATTTTTGGGAAAATGAAGGATATTTGCTCCCCAAATCTTGTTACCTGTAACATGATGCTTAAAGCTTACCTGGAACATGGGATGTTTGAGCAAGGAAAAGAATTGTTTGAGAAGATGTCAGAAAACACAAATCATGTGAAGAGAAATTCTGATTACAAAATTGTTGTGATACCGGATATTTACACATTCAACACCATGTTAGATGCATGTATAGTAGAGAAGAGATGGAATTACTTCAACTACGTCTACCAAAAGATGCTAGACCATGGATACCACTTCAATCCAAAACGTCATCTTCGAATAATACTGGAGGCATCAAGAGCTGGAAAGGAAGAGCCTATTGAAACGACGTGGAAGCACTTGATCCAAACAGATCGTATTATTCCAGCTACTCTGATAAAGGAAAGATTCTGTATGAAGCTTGAAAAGGATGACCATGTTGAAGCTCTTGAATGTATCACCAATGATCTCTCCAAAGAGTTGCAGGCATTTTCTAAGCTGTCTTGGTTGAATCTACTGAAAGAAAATGCTCAACGCTTTCAGAGGGATACACTAGTTAGGCTAATGGATGATGTAAACACCCTAGTTTCCAAAAGTAGCTTGCCACTTCCAGCACTTGAAGCACTTGAAAAGCTGATGCTATCTTTGGAAGAATTTTGTTCCCCTGACCTTAGGATGACTGACATCAAACACTGA 2730 0.4026 MGAVSFEISRNSAFALHCYGNSFSSGVTVFWRPFLGTSLNTRNASKGQVFHAQKLNYEPFCASLKSGFEAGLINDGLLSNKLEFKPSFDDYLKEMESARTVKEMESFRNVRVKKHTTSTEKQKREKVMSRKPRLEGVERSTKSGKLAGRVDKANELGIAETVMGKESSSVRHINLRARGAKRFDLECDGEESKLDITMKEKKEAEVVEDKYRIDRSKPDSDRNLIKRERRKTGNSKASLNWNSNCGNTVEGEVGHKVHTLKTAGGKDVTTSQIYCNSKGKMPIINKTVVSNNIVKIGLENSYTKNENAGKENGPENLNLIGSSRCYDYDNLEVERTAFKTFEEYNGVVNKPQVSHKEMEDRIQRLANLLNGADINIPEWIFSKMMRSAKIKFNDYSIVRVIQRLGKLGNWQRVIQVIEWLQRRERFKSHKLRHIYTAALDALGKARRPIEALNVFHAMLQQMSTYPDLVAYHSIAVTLGQAGCMKELFDVIDIMQLPPKKKFKVGALGNWDPRLEPDVIVYNAVLNGCVQQKQWEGAFWVLEQLKKQRQQPSATTFGLVMEVMFTCGKYNLVHEFFMKVQKFSIPNSLTYRVLVNTLWKEGKTDEAILAVQDMERREIVGSASLYYDLARCLCAAGRCSEALTQIEKICKVANKPLVVTYTGLIQACLESGNIQDGAYIFGKMKDICSPNLVTCNMMLKAYLEHGMFEQGKELFEKMSENTNHVKRNSDYKIVVIPDIYTFNTMLDACIVEKRWNYFNYVYQKMLDHGYHFNPKRHLRIILEASRAGKEEPIETTWKHLIQTDRIIPATLIKERFCMKLEKDDHVEALECITNDLSKELQAFSKLSWLNLLKENAQRFQRDTLVRLMDDVNTLVSKSSLPLPALEALEKLMLSLEEFCSPDLRMTDIKH 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g2318 909 MobiDBLite consensus disorder prediction 111 143 - -
Alju10g2318 909 Coils Coil 355 375 - -
Alju10g2318 909 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 690 720 IPR002885 -
Alju10g2318 909 NCBIfam pentatricopeptide repeat 434 467 IPR002885 -
Alju10g2318 909 NCBIfam pentatricopeptide repeat 519 552 IPR002885 -
Alju10g2318 909 NCBIfam pentatricopeptide repeat 692 720 IPR002885 -
Alju10g2318 909 NCBIfam pentatricopeptide repeat 658 684 IPR002885 -
Alju10g2318 909 NCBIfam pentatricopeptide repeat 739 770 IPR002885 -
Alju10g2318 909 Pfam PPR repeat 434 460 IPR002885 -
Alju10g2318 909 Pfam PPR repeat 589 617 IPR002885 -
Alju10g2318 909 Gene3D Tetratricopeptide repeat domain 645 814 IPR011990 GO:0005515
Alju10g2318 909 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 737 771 IPR002885 -
Alju10g2318 909 MobiDBLite consensus disorder prediction 214 243 - -
Alju10g2318 909 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 517 551 IPR002885 -
Alju10g2318 909 SUPERFAMILY TPR-like 587 720 IPR011990 GO:0005515
Alju10g2318 909 Gene3D Tetratricopeptide repeat domain 358 504 IPR011990 GO:0005515
Alju10g2318 909 Gene3D Tetratricopeptide repeat domain 506 609 IPR011990 GO:0005515
Alju10g2318 909 Pfam Pentatricopeptide repeat domain 656 701 IPR002885 -
Alju10g2318 909 MobiDBLite consensus disorder prediction 214 234 - -
Alju10g2318 909 FunFam Pentatricopeptide repeat-containing protein 360 506 - -
Alju10g2318 909 Pfam PPR repeat family 516 560 IPR002885 -
Alju10g2318 909 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 586 620 IPR002885 -
Alju10g2318 909 PANTHER OS01G0674700 PROTEIN 22 891 IPR044645 GO:0009658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g2318 Alju-ChrAlju10 44985531 44995260 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g2318 552 840 Glycosyltransferase AT1G05670 21.317 1.63e-07 53.1