Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g2286 ATGCACGGGTCAGCTTTCTACCGGGTTTTAATACCATGTCCAGAACTTGAAATAGCATCAAGAAAAGTAATAATGGAAAAGGCAGGTGGAAGGCCAAGGGATGAAGTGTGGAAACGCGTTACGCTATTGGAGGGAGGACGAAGAGTGAAGTGTAATGATTGTGGATGGGAATTTGCAGCAAGTGCTAACAGAATCAAAGCTCATATTAATAAAGTCGAAGGCAAAGGCATTCGAGTTTGTCCTGGCAATGCAAACTCCCATATTGATATTGAAGACAACCTCCTGCATTCTCAGAGACAAATCCAAGCTGATGATGCTGAGGATCAGGAAAGGATTCAAGTTGGGTCATCTTTTGTTTCCAATGAGGAGAATGAAGACTTGCAGATGATGAAACGATATGTGTTTGAATGTTTAAGACCTGAAGACAAGGTTTTTATATCTCCACTTTCATATTTGACTCAACAAGATTTTATTACACTTAAACCAGAGGCTCATTTAGATTCATTGGTAATAGATATTTTTGTAGAGATACTAACTGATATTGAGCGGAAGAAGAAAACTATGGCTTCGAATTGGTATCTTCCTATCACATTTTCGGATAAAGCACTCGAAGGCCACTTAGGTCGCTTCTTGCACTTTGTCCATGGCCAAAAACTGAGAGAAAATTATATGTCTGACCTAGAATCTTGTCAGAAGATTTTTATTCCTGTTCAAGTTGGAGCAAGGCCACATGGTGGACATTTTTATTTATACATTGTCCATGTAAAGAATAAAGAGATTGAAATATGGGATTCTCTGCCCAATACATCTGTGGCTGAAATAGGACGTGACGAGACAACAAAAAAATTGTTGCTTGCCCTCGAGAAACTCTTCGAGGAAGCTGTACTATTTACAACGTTTCATTTGAAGATGGCAAACGACATCCTCTTACAGCCTAATGGATTCGATTGTGGTATTTTCGTTATTAACTACATGGAACAATCAGACAATTATGCGAAGAGAAATCCTTTATTTCAGTTTAACAGTCAAAAAGAAAGGGGCGACTTGGCTTTGAAGTTGCTCGACAATGACCTGAATCAAGAAAAACAAAATTTATATGCCAAAGCAAGAGAGCACTATGCACAAGTTGAAAAGCAATGTGGCAATAAAAGATTACGAGTTGATGTTGGAAGTGAGCTGGAAGCAGAATATGATGTTTCTGACGAAGAAGATGATGGTTTGGAAAACGACTCGCCATGTGCCGCATGCAAGCTTCTCCAGAGAAGATGTGCTCAGGATTGCCTCTTTGCTCCTTACTTTCCTGCTGATGAACCCCAAAAATTTGCAAGTGTTCACGAGGTTTATGGTGCTAGCAATGTCAAGAAAATGTTGCAGGGGCTACCAGAGCATCAGAGGAGTGACGCAGTGAAAGCAATGGTATATGAAGCAAATACGAGGATGAGGGACCCAGTGTATGGATGTGTGGGGGCCATATCACATCTACAGAAACAAATTGATTTGCTTCAAACACAACTTGCTCTTGCTCAGGCAGAGTGTATTCACATCAGAATTTCTTCTTCTTCAACCCAACCCCAATCCTCCTCTCATATTAACGCCGAGTTATCTTCTCTTTTTCCCGTCGACAATGTCACTGAAAACTTGTGGTCTTGCTAG 1653 0.4041 MHGSAFYRVLIPCPELEIASRKVIMEKAGGRPRDEVWKRVTLLEGGRRVKCNDCGWEFAASANRIKAHINKVEGKGIRVCPGNANSHIDIEDNLLHSQRQIQADDAEDQERIQVGSSFVSNEENEDLQMMKRYVFECLRPEDKVFISPLSYLTQQDFITLKPEAHLDSLVIDIFVEILTDIERKKKTMASNWYLPITFSDKALEGHLGRFLHFVHGQKLRENYMSDLESCQKIFIPVQVGARPHGGHFYLYIVHVKNKEIEIWDSLPNTSVAEIGRDETTKKLLLALEKLFEEAVLFTTFHLKMANDILLQPNGFDCGIFVINYMEQSDNYAKRNPLFQFNSQKERGDLALKLLDNDLNQEKQNLYAKAREHYAQVEKQCGNKRLRVDVGSELEAEYDVSDEEDDGLENDSPCAACKLLQRRCAQDCLFAPYFPADEPQKFASVHEVYGASNVKKMLQGLPEHQRSDAVKAMVYEANTRMRDPVYGCVGAISHLQKQIDLLQTQLALAQAECIHIRISSSSTQPQSSSHINAELSSLFPVDNVTENLWSC 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g2286 550 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 409 528 - -
Alju10g2286 550 Coils Coil 491 511 - -
Alju10g2286 550 SUPERFAMILY Cysteine proteinases 140 355 IPR038765 -
Alju10g2286 550 Coils Coil 359 379 - -
Alju10g2286 550 Pfam Lateral organ boundaries (LOB) domain 412 509 IPR004883 -
Alju10g2286 550 ProSiteProfiles Ubiquitin-like protease family profile. 150 328 IPR003653 GO:0006508|GO:0008234
Alju10g2286 550 Pfam Ulp1 protease family, C-terminal catalytic domain 165 328 IPR003653 GO:0006508|GO:0008234
Alju10g2286 550 ProSiteProfiles LOB domain profile. 411 512 IPR004883 -
Alju10g2286 550 Gene3D Adenoviral Proteinase; Chain A 113 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g2286 Alju-ChrAlju10 44548017 44557965 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g2286 411 524 AS2 family AT1G31320 76.316 1.82e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Alju10g2286 Peptidase_C48 9.4e-13 CL0125