Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g2261 ATGCCGGATCCTAAGAAATGCGTCAATGGAGGCACAAATTCCCAAACCCACGCAGGCCGTGCCTCTCAACGAATCTACAAGTGCTCTTCCCCTGGCCGTTCACAAAATTCTTCCTCATTCTCTCACTCTCGTCTGAACTGTGTCACACGCAGCCGTTCCTCCTCTCCGCAAACAATAATTAACCACAACAAGATGCAGATCTTCGTGAAGACTTTGACGGGAAAGACCATCACTCTCGAGGTTGAGAGCAGTGACACGATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAAGGTATTCCTCCTGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACACTTGCTGATTATAACATCCAAAAGGAATCAACGCTTCACTTGGTTCTAAGGCTTAGAGGAGGGACAATGATTAAAGTGAAGACTTTAACAGGAAAAGAGATTGAAATTGACATTGAGCCGACCGATACCATTGACCGAATCAAGGAAAGGGTTGAAGAAAAAGAGGGAATTCCTCCAGTCCAGCAGAGGCTCATATATGCTGGTAAGCAGCTGGCCGACGATAAGACCGCCAAAGAATACAACATTGAGGGCGGCTCGGTGCTTCACTTAGTGCTTGCACTGCGGGGTGGTTGCTTGATTGATTGCTAA 666 0.473 MPDPKKCVNGGTNSQTHAGRASQRIYKCSSPGRSQNSSSFSHSRLNCVTRSRSSSPQTIINHNKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGCLIDC 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g2261 221 Pfam Ubiquitin family 67 138 IPR000626 GO:0005515
Alju10g2261 221 Pfam Ubiquitin family 143 214 IPR000626 GO:0005515
Alju10g2261 221 MobiDBLite consensus disorder prediction 1 22 - -
Alju10g2261 221 ProSiteProfiles Ubiquitin domain profile. 141 216 IPR000626 GO:0005515
Alju10g2261 221 FunFam Polyubiquitin 3 65 140 - -
Alju10g2261 221 ProSiteProfiles Ubiquitin domain profile. 65 140 IPR000626 GO:0005515
Alju10g2261 221 CDD Ubl_NEDD8 143 216 IPR038738 -
Alju10g2261 221 SUPERFAMILY Ubiquitin-like 142 217 IPR029071 -
Alju10g2261 221 ProSitePatterns Ubiquitin domain signature. 91 116 IPR019954 -
Alju10g2261 221 FunFam NEDD8 protein 141 218 - -
Alju10g2261 221 ProSitePatterns Ubiquitin domain signature. 167 192 IPR019954 -
Alju10g2261 221 CDD Ubl_ubiquitin 65 140 - -
Alju10g2261 221 SUPERFAMILY Ubiquitin-like 53 140 IPR029071 -
Alju10g2261 221 Gene3D - 142 219 - -
Alju10g2261 221 Gene3D - 57 141 - -
Alju10g2261 221 PANTHER UBIQUITIN 65 142 - -
Alju10g2261 221 MobiDBLite consensus disorder prediction 8 22 - -
Alju10g2261 221 PRINTS Ubiquitin signature 96 116 IPR019956 -
Alju10g2261 221 PRINTS Ubiquitin signature 117 138 IPR019956 -
Alju10g2261 221 PRINTS Ubiquitin signature 75 95 IPR019956 -
Alju10g2261 221 SMART ubq_7 141 212 IPR000626 GO:0005515
Alju10g2261 221 SMART ubq_7 65 136 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g2261 Alju-ChrAlju10 44105178 44107106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g2261 143 216 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 62.162 1.84e-26 97.4