Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g2247 ATGGATGAGGGAAAGCGTAAATCCAGGAAGGAAGGTTATGAAGGGAAGGAAGAGGATTCCAAGAGGGGTCGCCGTGAACGAGACCGTGAGAAGACTAGTGATAAAGGTAAGGATAGAAGTGAAGGGAGGCATAGGGATAGAGAGAAGAGGGATCGTGAGAGCCGACGCTATGAGAGAGAGAAAAGCAGTGATTCTGACGAAAGATTTGATAGAGAAAGAGAGAAGCATAGAGATAAGGATAAGGATAGGACACGAGTTCATGACGAAGAAAGAGAAAGGGCTCGAGACAAGAAAAGGGAAAGAGATAGGGAAGATAAGGAAAGGGACAGGAGAGATAGGAGGGAGAAAGAAAGGGAGAAGGAGAGAGAAAGGGAACGGGATAGGAGAGAGCGTGAAAGGGAGAGGGAAGTTGAAAAGGAAAGGGGGAGGAGAGGTAGAGAGAGGGAGAAGCGTAGGGAAGTTGATACTGAGCATAGTGATGATGATTCCAGGGATAGAGAAAGAAAGCGGCACAGGAAAGATGATGATGATTACAAGGGTAGAGAGCAGGAGAAGAGTGTCAGCAAGTCAAGTAGGCAAACTGAGAATAATGAGGAGAGCCCCCGGGAAAAGAGTGGCAATGATAACTCAGATGCTAATGAAAACAAACCAAGCCGTGAGGAGGAGTTAGAGGATGAAAATAGGAGGTTGGATGAAGAGATGGAAAAGAGGAGAAGGAGAGTTCAGGAATGGCAAGAGCTGAGGAGGAAGAGAGAAGAAGCCGAGAGAGAAAAGCATGGTGAAGCAAGTGCTGATGTACCCAAGTTTGGAAAGGCCTGGACACTTGAAGGGGAATCTGATGACGAAGAAGGAACCACTACAGGGAAGCCAAATACAGCTATGGATGTCAATGAAGATGACAAACCTTTGGATAAAGAACCTAAGGATTCTATGGCAGTAGATGTTAGTAATGGACCTGTTACATCTCATTTACCAGATGAAGCTAATGATTGTCATGCAGATGAGGAAATTGATCCATTGGATGCTTTCATGAATTCTATGGTTTTGCCTGAAGTTGAAAAGCTGAAGAGTGCTGTGGCTCCCGAATCTTCTAATCAGATTGCTGAGTCAATGCCCAAGGGTAACAGGGATGAGCAAAGTAATGGTGGGAACCCTAGGAAAGGTTCAAATAAATCAATTGGGAGAATAATTCCCGGTGAAGAGTCTGACTCAGATTATGAAGACCTTGAAACTGAGGGTGATCCATTAGATGAAGATGATGATGAATTCATGAAAAGAGTAAAGAAGACCAAAGCTGAGAAACTTTCTATTGTTGACCACTCAAAGATTGATTATAAGCCATTTAAGAAAAACTTTTACATTGAAGCAAAGGAGATTGCCAAGATGACTTCTGAAGAAGTTGCAGCATACAGGAAGGAATTGGAGTTGAAGATACATGGAAAGGATGTGCCAAAGCCTGTCAAATCATGGAATCAGATTGGACTCACTAGTAAAATCTTGGAGACAATAAAGAAGCTTAATTATGAAAAGCCAATGACTATTCAAGCTCAGGCCCTCCCTGTGATTATGAGTGGTCGAGATTGCATAGGAGTTGCTAAAACTGGGTCAGGAAAAACCCTTGCTTTTGTTCTGCCAATGCTGAGGCACATCAAGGATCAGCCACCAGTTGTTGCAGGAGATGGACCAATTGGGCTTATAATGGCCCCTACAAGGGAGCTTGTTCAACAGATTCACAGTGATATAAAGAAATTTGCAAAAGTGCTTGGTCTGAGGTGTGTGCCTGTCTATGGGGGTTCTGGTGTTGCCCAGCAAATCAGTGAATTGAAACGTGGTACTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGATATATTATGCACCAGCGGTGGAAAGATAACTAACCTGCGTAGAGTCACTTATCTGGTCATGGATGAGGCTGATCGTATGTTTGACATGGGCTTTGAACCTCAAATCACTCGAATTGTTCAGAATATTCGTCCAGATCGTCAAACTGTTCTCTTTTCTGCCACTTTTCCTCGTCAGGTTGAAATTCTGGCTCGTAAGGTTCTGAACAAGCCTGTTGAAATACAAGTTGGTGGAAGGAGTGTTGTTAACAAGGACATAACACAGCTGGTAGAGGTGAGGCTAGAAAATGAGAGGTTCTTCAGGCTCTTAGAATTACTTGGGGAATGGTATGAGAAGGGAAAGATTTTGATATTTGTTCACTCACAAGAGAAATGTGATGCTTTGTTCAAGGATTTGCTTAGACATGGTTATCCATGCCTTTCTCTTCATGGGGCTAAGGATCAGACGGATCGGGAATCCACAATTTCTGACTTCAAAAGAAATGTTTGTAATTTGTTGATTGCAACTAGTATTGCTGCCAGGGGTTTAGATGTCAAGGAGCTTGAATTGGTTATCAATTTTGATGTTCCAAACCACTATGAAGATTATGTACATCGTGTTGGACGTACAGGCCGAGCTGGTCGAAAGGGTTGTGCTATCACATTTATTTCAGAGGAAGAAGCACGATATGCACCAGATCTGGTTAAAGCTTTGGAACTATCTGAACAAATAGTTCCTGATGACCTGAAAGCTGTTGCTGATGGTTTTATGGCAAAAGTTAATCAAGGACTTGAGCAAGCCCATGGAACTGGTTATGGCGGCAGTGGCTTTAAATTTAATGAAGAAGAAGATGAGGTTAGGAGAGCAGCGAAGAAAGCACAAGCCAAAGAATATGGGTTTGAAGAAGATAAGTCTGATTCTGAGGATGAAGATGAAGGTATTAGGAAGGCAGGAGGTGACATCTCCCAGCATCCTGCTCTTGCACAGATTCTAGTTGCTGCCACCAAAGCAAACACCCCCACAATGCCCTCTACTTCCCAGGTAATTTCAAATGGTGGACTGCCTGTTTCTTTGCCTGGTGTTCTTGGTCTCCAGACTGCAGGAGTCATGCCTGGGACAGGGCTGCCCATTGTTCCAAGTGATGGAGCAACTCGGGCAGCATTAGCTGCGATGAACCTGCAAAATAAATTAGCAAAGATTGCTGGTGCAATGCCTGAGCATTATGAAGCTGAGTTGGAGATAAATGATTTCCCCCAAAATGCTCGGTGGAAAGTCACACACAAGGAAACTCTAGGCCCAGTTTCTGAGTGGACTGGAGCTGCTATTACCACCAGGGGACAGTATTTCCCGCCTGGCAAGGTCGCAGGACCTGGTGAACGGAAACTCTACTTGCTTTGCAGCTTCCTGGTGGTGCTCAACCAGGCAAATACTCTGTTGTATAATAGCTCAGGGGATCTCGTAATCCTTTCTTGCATATTCATCGGACTTCCTTGA 3342 0.4405 MDEGKRKSRKEGYEGKEEDSKRGRRERDREKTSDKGKDRSEGRHRDREKRDRESRRYEREKSSDSDERFDREREKHRDKDKDRTRVHDEERERARDKKRERDREDKERDRRDRREKEREKERERERDRREREREREVEKERGRRGREREKRREVDTEHSDDDSRDRERKRHRKDDDDYKGREQEKSVSKSSRQTENNEESPREKSGNDNSDANENKPSREEELEDENRRLDEEMEKRRRRVQEWQELRRKREEAEREKHGEASADVPKFGKAWTLEGESDDEEGTTTGKPNTAMDVNEDDKPLDKEPKDSMAVDVSNGPVTSHLPDEANDCHADEEIDPLDAFMNSMVLPEVEKLKSAVAPESSNQIAESMPKGNRDEQSNGGNPRKGSNKSIGRIIPGEESDSDYEDLETEGDPLDEDDDEFMKRVKKTKAEKLSIVDHSKIDYKPFKKNFYIEAKEIAKMTSEEVAAYRKELELKIHGKDVPKPVKSWNQIGLTSKILETIKKLNYEKPMTIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRLENERFFRLLELLGEWYEKGKILIFVHSQEKCDALFKDLLRHGYPCLSLHGAKDQTDRESTISDFKRNVCNLLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLVKALELSEQIVPDDLKAVADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPALAQILVAATKANTPTMPSTSQVISNGGLPVSLPGVLGLQTAGVMPGTGLPIVPSDGATRAALAAMNLQNKLAKIAGAMPEHYEAELEINDFPQNARWKVTHKETLGPVSEWTGAAITTRGQYFPPGKVAGPGERKLYLLCSFLVVLNQANTLLYNSSGDLVILSCIFIGLP 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g2247 1113 Gene3D - 698 872 IPR027417 -
Alju10g2247 1113 MobiDBLite consensus disorder prediction 904 936 - -
Alju10g2247 1113 MobiDBLite consensus disorder prediction 1 265 - -
Alju10g2247 1113 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 635 868 IPR027417 -
Alju10g2247 1113 CDD SF2_C_DEAD 709 839 - -
Alju10g2247 1113 PANTHER RNA HELICASE 434 908 - -
Alju10g2247 1113 Coils Coil 87 137 - -
Alju10g2247 1113 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 708 869 IPR001650 -
Alju10g2247 1113 Gene3D - 440 697 IPR027417 -
Alju10g2247 1113 Pfam DEAD/DEAH box helicase 513 684 IPR011545 GO:0003676|GO:0005524
Alju10g2247 1113 Coils Coil 216 257 - -
Alju10g2247 1113 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 643 651 IPR000629 -
Alju10g2247 1113 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 846 IPR027417 -
Alju10g2247 1113 MobiDBLite consensus disorder prediction 403 419 - -
Alju10g2247 1113 FunFam probable ATP-dependent RNA helicase DDX17 450 700 - -
Alju10g2247 1113 MobiDBLite consensus disorder prediction 1 337 - -
Alju10g2247 1113 SMART ultradead3 507 712 IPR014001 -
Alju10g2247 1113 Pfam Helicase conserved C-terminal domain 724 830 IPR001650 -
Alju10g2247 1113 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 488 516 IPR014014 GO:0003724
Alju10g2247 1113 MobiDBLite consensus disorder prediction 294 311 - -
Alju10g2247 1113 MobiDBLite consensus disorder prediction 356 421 - -
Alju10g2247 1113 MobiDBLite consensus disorder prediction 904 918 - -
Alju10g2247 1113 CDD DEADc_DDX46 477 698 - -
Alju10g2247 1113 SMART helicmild6 749 830 IPR001650 -
Alju10g2247 1113 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 519 697 IPR014001 -
Alju10g2247 1113 MobiDBLite consensus disorder prediction 359 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g2247 Alju-ChrAlju10 43860654 43865711 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g2247 475 850 Eukaryotic Initiation Factors Gene Family AT3G19760 32.105 1.74e-57 202