Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g2225 ATGAAGCCCTCTACCAGCAACAGCAGAAGGTCTCTGAGACTTCTTGAGAAGGAAGAGAGAAGACCATCAAAGAAAACAAGCACGACAAGTTCTCGAAGAAGCACAGCGAGAGCCGAGAAGAACAATTCTGACCGATCTGAATCTCCGGTTGCCGGAAATATACTTGGCGAATTGGAACGGAGAATGGGCAAGGATGGATATTACTACGAATGCCTCTTATGTGAAGATGGAGGCAGACTAATTTGTTGTGAGAAGTGTCCAGGAACCTATCACCGGAAGTGCTTGGGTCTTCGGACTATTCCAAAGGGCGAATGGCTGTGCCCTACTTGCAGTGATAACGCTGCGTCATCAAAGGAAAGTTTTCTGAAGGAATTGGGTACCAAAAAACCTTTAGCCTTCAAGAAAAAGAAAGCTGCTGCTTCTCCTTCTTCACTTTCTTCTTCAAAGAGCGACTAG 456 0.4583 MKPSTSNSRRSLRLLEKEERRPSKKTSTTSSRRSTARAEKNNSDRSESPVAGNILGELERRMGKDGYYYECLLCEDGGRLICCEKCPGTYHRKCLGLRTIPKGEWLCPTCSDNAASSKESFLKELGTKKPLAFKKKKAAASPSSLSSSKSD 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g2225 151 PANTHER PHD FINGER PROTEIN 13 144 - -
Alju10g2225 151 MobiDBLite consensus disorder prediction 1 54 - -
Alju10g2225 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 149 IPR013083 -
Alju10g2225 151 MobiDBLite consensus disorder prediction 11 26 - -
Alju10g2225 151 ProSitePatterns Zinc finger PHD-type signature. 71 110 IPR019786 -
Alju10g2225 151 ProSiteProfiles Zinc finger PHD-type profile. 68 113 IPR019787 -
Alju10g2225 151 Pfam PHD-finger 71 111 IPR019787 -
Alju10g2225 151 SUPERFAMILY FYVE/PHD zinc finger 68 111 IPR011011 -
Alju10g2225 151 SMART PHD_3 70 111 IPR001965 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g2225 71 111 PHD Transcription Factor Family AT1G05380 56.098 2.15e-15 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju10g2225 PHD 5.5e-08 CL0390