Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g2200 ATGTTCCCTCCAAAGAAGGCCTCATCTATGAATTCTCAAGAGAGAGGCATGTGTGTTCAACCTGACTCTGGCCTCGTCCTCACCACTGATCCTAAGCCTCGCCTTCGCTGGACCGTCGAACTCCATGAACGCTTCGTTGACGCCGTCACCCAGCTCGGTGGCCCTGACAAGGCAACACCGAAGACGATCATGAGGGTGATGGGTGTGAATGGTCTTACGCTTTACCACCTAAAGAGTCACCTTCAGAAATTTAGGCTTGGAAAGCAGCCCCACAAGGACTTCAACGATCATTCCCTCAAGAATGCTTCGGCTTTAGAACTTCAACGAAATTCTGCCTCCTCTTCCGCCATGATCGGTCGCAATATGAACGAGATGCAAATGGAGGTGCAGAGACGACTTCACGAACAACTAGAGGTTCAGAAACATCTTCAGCTGAGAATTGAAGCTCAAGGGAAATACATGCAGAGCATATTAGAGAAGGCTTATCAAACACTTGCTGGTGAAAATTTGAAGAACAATATCAATGGAGCTCATCATCTTCATCAAGCCAATATGATCCCTCCTCATCAAGATTTCACTTCTTCATTCCCTCTCAACCCTAATTTCCCTTCTTTTCAAGATCAGCTTAACATCTACGGCGGCGGCAGCGATGACCAGCTCGATCATCACCTTCATCATCATCAGTTCATGCCAAATAGCAGCAACAACACAGAAAATCTCTGTGTGGGGATGAACAACAACAACAATAATAATAAGAACAAGAGGCCTTTGATTTGGAACAATGAAGACCTAAGGCTTCATCATCAAGATCATCATCTGGGAATTGCTTCTTCTTCTTTGTGTCTTGATACTGATCCTTTTAAGGATGTTTCATTGGATAGAATCACAAGTAGTTCTGAGAATAACAACATTAATATTGATCCTATTTCAGACATTTATGACACTAAGCCTTTACTTCATCATCAAGAGGACACTTTGGGGGATATTAGTACTACTGAGAATAAGAAGCTTATTGAAAGGCCTTCACCAAAAAGGGTACATTCCCTTCAACCAGCAGATCAAAGGATGAGTCATATGATTAGCACTGGTACACCATTTTAG 1101 0.4332 MFPPKKASSMNSQERGMCVQPDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVNGLTLYHLKSHLQKFRLGKQPHKDFNDHSLKNASALELQRNSASSSAMIGRNMNEMQMEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENLKNNINGAHHLHQANMIPPHQDFTSSFPLNPNFPSFQDQLNIYGGGSDDQLDHHLHHHQFMPNSSNNTENLCVGMNNNNNNNKNKRPLIWNNEDLRLHHQDHHLGIASSSLCLDTDPFKDVSLDRITSSSENNNINIDPISDIYDTKPLLHHQEDTLGDISTTENKKLIERPSPKRVHSLQPADQRMSHMISTGTPF 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g2200 366 Pfam Myb-like DNA-binding domain 35 83 IPR001005 -
Alju10g2200 366 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Alju10g2200 366 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677
Alju10g2200 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
Alju10g2200 366 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 11 247 IPR044848 GO:0003700
Alju10g2200 366 FunFam Myb family transcription factor 31 89 - -
Alju10g2200 366 Gene3D - 31 89 - -
Alju10g2200 366 Pfam MYB-CC type transfactor, LHEQLE motif 125 164 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g2200 Alju-ChrAlju10 42931936 42934007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g2200 1 345 G2-like Transcription Factor Family AT1G79430 54.521 3.61e-110 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Alju10g2200 Myb_DNA-binding 1.8e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju10g2200 10 42931936 42934007 Alju10g2200 10 42931936 42934007 ECH