Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g2198 ATGGCTTCAACGAGTTTTTCTCTCCCACCTGGATTTCGGTTCCATCCAACAGATGAAGAACTTGTTTCTTACTACCTAGAAAGAAAGATAACAGGTCGCTCGATAGAGCTTCATATAATCCCTGAAGTTGATCTATACAAACATGAGCCTTGGAATTTGCCAGAGAAGTCATGGTTGGCAAGTAAAGATATGGAGTGGTATTTCTACAGTAGAAGGGATAGAAAGTACCCAAATGGATCAAGAACTAATAGGGCAACAAGAGCTGGTTATTGGAAAGCTACAGGGAGAGATAGGCCTGTGACTGTGAGTTCTCATCATCAAAAGCCATCTCTTGGGGTGAAGAAGACGTTGGTATATTATAAAGGTCGAGCTCCTCATGGCATCAAAACCAACTGGTTTATGCACGAATATCGCCTCATTGATTCAAAACCTCCAAGTGTTTTCTCATCTTTAATGGATTCTTACTCATTGTGAACACGACACACAGAAACTGGTATGGTAGATGATTTTCAAGCACAATTCGCTTGTGATGAAGCAAACAGTGAAGTTAATAACACATATTCTCTGGGCATAATGGAGGACTCATCATATCTGTTTCAGGATATGGAGGTGCCTATTTATGGAAGCATGCATGATGAAATTGCAGCATACAGATCAATACCTTTGGAGCATTTGGAGATGGAAGATTTGCCACAAATAAATTTTCCAGAGATAAAACCAACATTAATGAAGCCTGAAATTATAAGTAGCCAATGCGTTTCATCTGATAAGTACAAGGACTGTACCTATGGAACCCTAGAAGATCAGTGGTCATCTCTGTGTTCCTCTTAA 831 0.3983 MASTSFSLPPGFRFHPTDEELVSYYLERKITGRSIELHIIPEVDLYKHEPWNLPEKSWLASKDMEWYFYSRRDRKYPNGSRTNRATRAGYWKATGRDRPVTVSSHHQKPSLGVKKTLVYYKGRAPHGIKTNWFMHEYRLIDSKPPSVFSSLMDSYSLXTRHTETGMVDDFQAQFACDEANSEVNNTYSLGIMEDSSYLFQDMEVPIYGSMHDEIAAYRSIPLEHLEMEDLPQINFPEIKPTLMKPEIISSQCVSSDKYKDCTYGTLEDQWSSLCSS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g2198 276 Gene3D NAC domain 17 168 IPR036093 GO:0003677|GO:0006355
Alju10g2198 276 Pfam No apical meristem (NAM) protein 9 139 IPR003441 GO:0003677|GO:0006355
Alju10g2198 276 ProSiteProfiles NAC domain profile. 8 163 IPR003441 GO:0003677|GO:0006355
Alju10g2198 276 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 143 - -
Alju10g2198 276 FunFam Nac domain-containing protein 86 17 164 - -
Alju10g2198 276 SUPERFAMILY NAC domain 5 145 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g2198 Alju-ChrAlju10 42850441 42853673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g2198 7 173 NAC Transcription Factor Family AT3G17730 64.072 5.96e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Alju10g2198 NAM 1.8e-38 No_clan