Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g2173 ATGCCAGTTTTGTTCTCTGCACGGTTGGTTCTGCTAGTCGGAGAAACGCTGCCCTTGCGAAGGTTCTTCCCGGCTTCTAGTACTTCTTATTTGCATAGCAGTGTCCGTTGTTTAAGTCACATAGAGCCTCAACATGCTCCCCTTACTCCCTTAAGCATGGGTTTGAATAATGAGAATGAAACTAGGACGAATAACAAAGTCAATAAACTGAAGCAGTTGGGTTCCTCCTCTGTAGCCTCAAAGAGCAGAGCAAAGACCATTGGTATCAACAAAAATAAAGCAGTTGGAGTCACAAAGAAGCAGCAGATAGAATCTGCTCCGTTTGCCGCCAAGTCTTTTTCTGAACTTGGCCTCCCTCATTTGTTGCTTGAGAGATTGGAAAATGAAGGTTTTACGGTTCCAACTGAAGTGCAGTCTGCAGCAATTCCTACAATTTTGAATGATCATGATGTCATAATTCAATCTTACACAGGATCAGGGAAAACATTGGCTTATCTTCTACCCATACTATCTAACGTCGGCCCTTTGAGGAACAAAACTTCTGAAGGTAACAGTGGTGGTGAACCCGGGAAGAAAATGGGAATAGAGGCTGTCGTTGTTGCTCCCTCTAGGGAGCTAGGTATGCAGATAGTGAGGGAGTTTGAGAAGATACTTGGACTTGCTAACAAAAAGGCGGTCCAACAGCTAGTGGGAGGCGCAAACAGATCCAGGCAAGAAGAAGCCCTCAAGAAAAATAAACCTGCCATTGTAGTTGGCACACCAGGTAGAATAGCTGAGCTTAGTGCAGCTGGGAAACTTCACACCCATGGCTGTCGTTATTTGATCCTAGATGAAGTCGATGAACTCCTGTCATTTAACTTCCGGGAGGACATGCACCGGATACTAGAACACGTGGGGAGAAGATCAGGAGCTGACCCACGAGCGCAAAATGGTACAGCTCCTCGACAGGCTGAGCGTCAAACAATTATGGTATCTGCAACTGTTCCGTTTTCTGTTGTCAGGGCAGCCCGGAGCTGGGCGAATGACCCACTTCTTGTCCAAGCCAATAAAGTCGGCCTGCTTGCAACCATTTCTCCTCCCACGCCTGTCAATTTATCTGGATCTGCTCCTAGCTCAAATTCTAACTCTACTACTCTTACACAAGCAGCAGAGAGTCTACCTCCTGCATTAAAACATTATTATTGTGTCACGAAGTTACAGCATAAAGTTGATACCTTGAGAAGGTGTATTCACGCACTAGATGCCAAATATGTGATAGCTTTCATGAACCATATTAAGCCACTTAAGGATGTCGTTTTCAAGCTCGAGGCACGTGGGATGAAAGCTGCAGAGTTACATGGGGATCTTGGGAAACTTGCCAGGTCAACAACTCTGAAGAAGTTCAAGAATGGTGAGGTGAGAGTGCTTGTGACCAATGAATTATCAGCACGGGGATTGGATGTAGCGGAATGCGATCTTGTGGTTAATTTGGAATTACCCACAGACTCAATTCACTATGCGCACCGAGCCGGCAGGACTGGGCGGCTTGGGAGGTCTGGTACGGTGCTTTCAATATGTGAAGAGCCAGAAGTGTTTGTTGTGAAGAAACTGGAGAAGCAGCTTGGGATACCAATAGCGAGCTGTGACTTTGTAGAGGGAAAGCTACTTGTTAAAGAAGAAGAGAAAATGCTAAATGTTGTGAGATGA 1686 0.4567 MPVLFSARLVLLVGETLPLRRFFPASSTSYLHSSVRCLSHIEPQHAPLTPLSMGLNNENETRTNNKVNKLKQLGSSSVASKSRAKTIGINKNKAVGVTKKQQIESAPFAAKSFSELGLPHLLLERLENEGFTVPTEVQSAAIPTILNDHDVIIQSYTGSGKTLAYLLPILSNVGPLRNKTSEGNSGGEPGKKMGIEAVVVAPSRELGMQIVREFEKILGLANKKAVQQLVGGANRSRQEEALKKNKPAIVVGTPGRIAELSAAGKLHTHGCRYLILDEVDELLSFNFREDMHRILEHVGRRSGADPRAQNGTAPRQAERQTIMVSATVPFSVVRAARSWANDPLLVQANKVGLLATISPPTPVNLSGSAPSSNSNSTTLTQAAESLPPALKHYYCVTKLQHKVDTLRRCIHALDAKYVIAFMNHIKPLKDVVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLELPTDSIHYAHRAGRTGRLGRSGTVLSICEEPEVFVVKKLEKQLGIPIASCDFVEGKLLVKEEEKMLNVVR 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g2173 561 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 405 549 IPR001650 -
Alju10g2173 561 Gene3D - 389 554 IPR027417 -
Alju10g2173 561 SMART helicmild6 429 510 IPR001650 -
Alju10g2173 561 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 29 548 - -
Alju10g2173 561 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 346 IPR014001 -
Alju10g2173 561 Pfam DEAD/DEAH box helicase 135 332 IPR011545 GO:0003676|GO:0005524
Alju10g2173 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 531 IPR027417 -
Alju10g2173 561 Gene3D - 71 349 IPR027417 -
Alju10g2173 561 CDD DEADc 122 347 - -
Alju10g2173 561 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 111 139 IPR014014 GO:0003724
Alju10g2173 561 Pfam Helicase conserved C-terminal domain 404 510 IPR001650 -
Alju10g2173 561 SMART ultradead3 130 366 IPR014001 -
Alju10g2173 561 CDD SF2_C_DEAD 390 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g2173 Alju-ChrAlju10 42181482 42183167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g2173 112 538 Eukaryotic Initiation Factors Gene Family AT3G19760 24.533 1.93e-40 149