Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g2171 ATGGCTACCACCACAACCGCCGCCGCCGCTCCTTCGCGCCAGCTTTCCCAGAAGGAGGCTGACATCCAGATGATGTTGGCCGCCGAGGTCCACCTCGGAACCAAAAACTGCAACTTCCAAATGGAGCGCTATGTGTTCAAGCGCCGCAACGATGGTATCTACATCATTAATCTCGGAAAAACATGGGAGAAGCTTCACCTTGCTGCCAGGGTTATTGTTGCCATTGAGAACGCTCAAGATATTATTGTTCAGTCTGCTAGACCTTATGGTCAAAGAGCTGTTCTCAAGTTTGCTCAATACACTGGTGCCCATGCACTTGCCGGGAGACACACCCCAGGAACCTTCACTAATCAGCTCCAGACCTCCTACAGTGAGCCTCGCCTCCTAATTCTAACTGATCCAAGAACGGACCATCAGCCCATCAAGGAAGCTGCTCTTGGAAACATACCAACCATTGCTTTTTGTGACACTGATTCTCCCATGCGATATGTTGATATTGGGATTCCTGCCAATAACAAGGGGAAACATAGCATTGGTTGTCTTTTTTGGCTTTTAGCAAGGATGGTTCTGCAGATGCGGGGCACTATTCGTCCTGGGCTTAAGTGGGATGTCATGGTGGACTTGTTCTTCTACAGAGAACCTGAGGAGACGAAGCAACTTGAGGAAGAGGAGACGCCCGCTGTCCAAGATTATACTGCTGCAGATTTTGGTGCCGGTATTGGTGCCATTTCTGATGCCCATTGGCCTGTTGGAGCTGATCAATCATGGACTGAAACGGTACCACAACCTATTCCGGCAGTTCCTGATGTCAGCTGGACCCCAGAAGCTGCTACAGGGGATTGGGGTGATGCTGTCCCAGCTCCCCAACCACAACCACAACCACAACCACAACCACAACCACAAGCTTCTGTTCCCGGAATTCAGAACATCACTCCTACTGGCTGGGAATAA 951 0.5037 MATTTTAAAAPSRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLHLAARVIVAIENAQDIIVQSARPYGQRAVLKFAQYTGAHALAGRHTPGTFTNQLQTSYSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEETKQLEEEETPAVQDYTAADFGAGIGAISDAHWPVGADQSWTETVPQPIPAVPDVSWTPEAATGDWGDAVPAPQPQPQPQPQPQPQASVPGIQNITPTGWE 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g2171 316 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Alju10g2171 316 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Alju10g2171 316 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Alju10g2171 316 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Alju10g2171 316 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Alju10g2171 316 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Alju10g2171 316 FunFam 40S ribosomal protein SA 21 227 - -
Alju10g2171 316 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
Alju10g2171 316 PANTHER 40S RIBOSOMAL PROTEIN SA 12 291 IPR005707 GO:0003735|GO:0006412|GO:0015935
Alju10g2171 316 Pfam Ribosomal protein S2 123 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Alju10g2171 316 Pfam Ribosomal protein S2 25 120 IPR001865 GO:0003735|GO:0005840|GO:0006412
Alju10g2171 316 Gene3D - 21 227 - -
Alju10g2171 316 Hamap 40S ribosomal protein SA [rps-0]. 9 259 IPR027498 GO:0003735|GO:0006412|GO:0015935
Alju10g2171 316 MobiDBLite consensus disorder prediction 254 316 - -
Alju10g2171 316 ProSitePatterns Ribosomal protein S2 signature 1. 22 33 IPR018130 GO:0003735|GO:0005840|GO:0006412
Alju10g2171 316 MobiDBLite consensus disorder prediction 302 316 - -
Alju10g2171 316 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
Alju10g2171 316 NCBIfam 30S ribosomal protein S2 17 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
Alju10g2171 316 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Alju10g2171 316 MobiDBLite consensus disorder prediction 287 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g2171 Alju-ChrAlju10 42172647 42175020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g2171 9 277 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.170 9.07e-148 415