Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g2164 ATGGCAAATCAACTCTATCTCTATGCATATAGCCCTACCTACGGAGGAGCTTCACCGCCTTCCGCCGCCGCCGCCACAACCACTGGCAGTACCCTTTCCTCCAGCCGATATCTTTCTACCGATATGTATTTTCCTCAACGTAAAGACTCCATTCTTCGATACTCCTCTTACGCTGCTTCCGATGCCGACATTGGCCCACCTGGTGTTTCTACCAGACTCTCCAGCGCCGCCTCCGGCCAAACATCTTCCACCGCTACTCAGTTACTATCTCAAGCTTCTTGGCCTGCTGCTATTGCTGCAGCTGCTGCAGCAAATGTTGGTTCTGCTGCATTGGACTCGATTGTTAACCTGAAACGCTCTTCTGATGCGCTCTACCATCCAACTGTTTTGCAAACCCATAACACAATTGGGCAAAGTGAAGCTTGGTATTCTACAAGTTTATTAACAAAGCGCCCTAGATACGAGAGTACAAGCCACTTGCCTATATACCCGCAGAGGCCAGGAGAGAAGGATTGTGCACACTATATGCTCACAAGAACCTGTAAATTTGGAGATGCCTGCATATTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGTTCCAAATGTTGGTACAAGTGAGACTCTTCCTGAGAGACCAGGAGAACCAGATTGTCCATACTTTCTGAAAACTAAGAGATGCAAGTTTGGTTTAAGGTGCAAGTTTAATCATCCCATGCATTTGATTGAAAATGCTGATGTTTCTACGTTACCTGAGAGGCCTTCGGAGCCCCCATGCGCGTTCTACATAAAAACTGGAAATTGCAAGTTTGGTATTACCTGCAAATTTCATCACCCAAAAGACATACAGATTCATCTATCTGAAGAACAGAATGGTGCTGTTGAGCAGACCCATTTGACCCCTCATATAGAGGGGGCTTCAGGAGATACACAATTATCTAATCTTTTTAGTTCGTACACTGCTCCTGTATTGCAGAATAGCAAAGGGCTTCCTGTCAGACTGGGTGAAGTAGATTGTCCATTCTACATGAAAACTGGCAGCTGCAAATATGGTGCTACGTGCCGCTACAGTCATCCTGATAGGAATGTAATTAATCCACCTGCTGCTGGTTTAGGCCATTCAGTTTTGACATCAGCAGCTGGTAATCTTAACTTCGGAATTGTAAATCCAGCTGCATCTATTTATCAAGCTTTTGACCCCAGATTGTCAAGTGCAACGTCCCAGGTGGGAATAGCACCAGCCATCTATCCTCAACGACCAGGACAGATTGAGTGTGATTACTATATGAAGACTGGAGAGTGTAAATTTGGAGAGAGATGCAAGTTCCATCACCCAATTGACCGCTCAGCACCATCACAATCAAATTCAGCCGTGCAACAAGCTGTTAAACTCACTCCTGCAGGATTACCGAGGAGAGAGGGGTCCGTAATCTGTCCATATTATTTAAAAACTGGCACCTGCAAGTTTGGTGCAACCTGCAAGTTTGACCACCCTCCTCCTGGAGAAGTTATGGAGATGGCAAAGTTACAAGGAGGCGATGAAGGAGGAGACGAAGCCGAAGCCAATTGA 1587 0.4606 MANQLYLYAYSPTYGGASPPSAAAATTTGSTLSSSRYLSTDMYFPQRKDSILRYSSYAASDADIGPPGVSTRLSSAASGQTSSTATQLLSQASWPAAIAAAAAANVGSAALDSIVNLKRSSDALYHPTVLQTHNTIGQSEAWYSTSLLTKRPRYESTSHLPIYPQRPGEKDCAHYMLTRTCKFGDACIFDHPIWVPEGGIPDWKEVPNVGTSETLPERPGEPDCPYFLKTKRCKFGLRCKFNHPMHLIENADVSTLPERPSEPPCAFYIKTGNCKFGITCKFHHPKDIQIHLSEEQNGAVEQTHLTPHIEGASGDTQLSNLFSSYTAPVLQNSKGLPVRLGEVDCPFYMKTGSCKYGATCRYSHPDRNVINPPAAGLGHSVLTSAAGNLNFGIVNPAASIYQAFDPRLSSATSQVGIAPAIYPQRPGQIECDYYMKTGECKFGERCKFHHPIDRSAPSQSNSAVQQAVKLTPAGLPRREGSVICPYYLKTGTCKFGATCKFDHPPPGEVMEMAKLQGGDEGGDEAEAN 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g2164 528 SMART c3hfinal6 259 286 IPR000571 GO:0046872
Alju10g2164 528 SMART c3hfinal6 166 193 IPR000571 GO:0046872
Alju10g2164 528 SMART c3hfinal6 478 505 IPR000571 GO:0046872
Alju10g2164 528 SMART c3hfinal6 218 245 IPR000571 GO:0046872
Alju10g2164 528 SMART c3hfinal6 425 452 IPR000571 GO:0046872
Alju10g2164 528 SMART c3hfinal6 339 366 IPR000571 GO:0046872
Alju10g2164 528 SUPERFAMILY CCCH zinc finger 223 246 IPR036855 GO:0046872
Alju10g2164 528 ProSiteProfiles Zinc finger C3H1-type profile. 166 194 IPR000571 GO:0046872
Alju10g2164 528 SUPERFAMILY CCCH zinc finger 262 287 IPR036855 GO:0046872
Alju10g2164 528 FunFam zinc finger CCCH domain-containing protein 37 423 519 - -
Alju10g2164 528 Gene3D - 165 250 - -
Alju10g2164 528 Gene3D - 423 517 - -
Alju10g2164 528 PANTHER PROTEIN PHOSPHATASE RELATED 326 378 - -
Alju10g2164 528 SUPERFAMILY CCCH zinc finger 481 505 IPR036855 GO:0046872
Alju10g2164 528 ProSiteProfiles Zinc finger C3H1-type profile. 339 367 IPR000571 GO:0046872
Alju10g2164 528 Gene3D - 251 297 - -
Alju10g2164 528 Gene3D - 324 371 - -
Alju10g2164 528 SUPERFAMILY CCCH zinc finger 343 367 IPR036855 GO:0046872
Alju10g2164 528 ProSiteProfiles Zinc finger C3H1-type profile. 259 287 IPR000571 GO:0046872
Alju10g2164 528 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 428 451 IPR000571 GO:0046872
Alju10g2164 528 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 168 192 IPR000571 GO:0046872
Alju10g2164 528 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 342 365 IPR000571 GO:0046872
Alju10g2164 528 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 481 505 IPR000571 GO:0046872
Alju10g2164 528 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 220 245 IPR000571 GO:0046872
Alju10g2164 528 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 286 IPR000571 GO:0046872
Alju10g2164 528 ProSiteProfiles Zinc finger C3H1-type profile. 425 453 IPR000571 GO:0046872
Alju10g2164 528 FunFam Zinc finger CCCH domain-containing protein 37 122 203 - -
Alju10g2164 528 SUPERFAMILY CCCH zinc finger 427 453 IPR036855 GO:0046872
Alju10g2164 528 ProSiteProfiles Zinc finger C3H1-type profile. 478 506 IPR000571 GO:0046872
Alju10g2164 528 ProSiteProfiles Zinc finger C3H1-type profile. 218 246 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g2164 Alju-ChrAlju10 42097856 42105467 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g2164 337 517 C2H2 Transcription Factor Family AT3G02830 36.264 2.04e-29 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju10g2164 zf-CCCH 1.3e-10 CL0537