Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g2161 ATGCCAGGAAGCGGACAAGTGACAGTTCCTCCAGGTTTTAGGTTTCACCCAACAGATGAAGAACTTCTTTACTATTACCTGAGGAAGAAGGTCTCTTATGAAGCCATTGACCTTGACGTCATCAGAGAAGTTGATCTTAACAAGCTTGAACCGTGGGACCTCAAAGACAAGTGTAGAATTGGATCAGGGCCACAGAACGATTGGTATTTCTTCAGCCACAAGGACAAGAAGTACCCAACAGGAACAAGAACAAATAGGGCAACTACAGCTGGGTTTTGGAAGGCCACAGGAAGGGACAAGGCCATTTATCTCACTAATTCCAAGAGGATTGGCCTGAGGAAAACCCTTGTCTTCTACACTGGCCGTGCTCCTCACGGCCAAAAGACCGATTGGATCATGCACGAGTATCGTCTCGACGAAGATGATATCCACGTTCAGGAAGATGGGTGGGTAGTTTGTAGGGTTTTCACAAAGAAGAACCTGAATAGAGGCTACCAAACAGCAGAAAAGGAAGAAGAAGAAGAGTACTTAGCTACCCAAATGAGAACAAAGAGTGGATCAAACCAGAACCAAGTATTAGACCCAAAGCAACAACACTACCTTCATCATCATCACATGCAAGCACTATATGATGATCATCATCATCATCAACAACAACAACAACAAAACTATAGCCTTGAAGGATCAATACAACACCTTCCCCAATTATTCAGTCCTGAATCTGCCGCGGTATTACCGGCAGCCACCGCCATCGACCAAGCAGTCGAGTGCTCTCAGAATTTGTTGAGGCTCACAAGCACAAAAACAAGTGGTGGTGGACTAAATCTTAATCTCAATCATTATAATAATGACGATCACTGGTCATTTTTGGACAAGCTTCTTGCTTCACAAAACCACAGGTACGTGTCTTCGCATGATCATCATGCTGGTTTGGCTTCTTCAACCTTCCAGAAATTCCCAGCTTCTGTTCTTTACCTTGGTTGTGACCCTCGTGACCTTGTCAGGTTCTCTAAGTAG 1017 0.4444 MPGSGQVTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNDWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYLTNSKRIGLRKTLVFYTGRAPHGQKTDWIMHEYRLDEDDIHVQEDGWVVCRVFTKKNLNRGYQTAEKEEEEEYLATQMRTKSGSNQNQVLDPKQQHYLHHHHMQALYDDHHHHQQQQQQNYSLEGSIQHLPQLFSPESAAVLPAATAIDQAVECSQNLLRLTSTKTSGGGLNLNLNHYNNDDHWSFLDKLLASQNHRYVSSHDHHAGLASSTFQKFPASVLYLGCDPRDLVRFSK 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g2161 338 FunFam NAC domain-containing protein 18 162 - -
Alju10g2161 338 Pfam No apical meristem (NAM) protein 10 138 IPR003441 GO:0003677|GO:0006355
Alju10g2161 338 Gene3D NAC domain 18 163 IPR036093 GO:0003677|GO:0006355
Alju10g2161 338 ProSiteProfiles NAC domain profile. 9 158 IPR003441 GO:0003677|GO:0006355
Alju10g2161 338 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 222 - -
Alju10g2161 338 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g2161 Alju-ChrAlju10 42011309 42013917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g2161 1 296 NAC Transcription Factor Family AT1G79580 59.936 4.15e-115 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Alju10g2161 NAM 3.6e-37 No_clan