Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g2105 ATGATTATGGAGCTTGGGTTGAGCTTAGGAGCTTCTTCAAAGTCTTTCACTTTCATGGAAAAGCCACAATCTAACAATAACCCACAAGAAGTCGACTTTGGCCTCAACACTGCCTTATCGATTGGTCCGATGATCAGTAACACCAGCAAAAGCTGTGACGACGACGAAGAAGATGAAGATCGAGAAGAAGCCAAGAAGGAAAATCATCACAGTATTACTACTATCAAAGAAGATCATCATCAAGCTGCTGCTTCTCTTTCCTCTTCTTCCTCACAGCTTCATCATCTTCTTCCTCACAGTTCCAAGCCTGTACCTCTCTCTTCCTTTTCATGGCCTCCTCCTGATAACTGTGATGAAGTGGGAGCTAATAATTCAGTGAGGGGTTTGAAGGTGAAGACGAAGGCGGAGGAGGAAGAGTCGGAGGAGAGGACGGTGCTGTCGTCGTCTCCGATGAGCGGAGCGTCGTCGTTTCAGGTGGGTCTGTGCATATACAGTAGTAATAATAATAAATCAGGAAATTATTACAGTAACAGAAAGAGGAAGAAGATGATGAATGAATCAGAAGGCGATGAAGGTAATTATAGTTATTACGATCATCAGAGGGGTTGTTCATCAAGAGCAAGCGACGAAGACGACGTCGGAGTTCGAGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTACCAGAAAGAAGCTGAGGCTTTCTAAAGAACAATCAGCTTTTCTAGAAGAAAGCTTCAAGGAACACAGTACTCTCAATCCTAAACAAAAACTTGCTCTTGCCAAACAACTCAATCTTCGTCCTCGTCAAGTCGAAGTCTGGTTTCAAAACCGAAGAGCAAGGACGAAGCTGAAGCAGACGGAGGTGGACTGCGAGTACTTAAAGAGATGCTGCGAGACGCTATCAGAAGAGAACAGGAGGCTGCAGAAGGAGCTTCAAGAACTGAGGGCTTTGAAGGCTTCAAACTCAAACCCTTTCTTCATGCAATTACCAGCCACCACCTTGACCATGTGCCCTTCCTGTGAGCGCCTCGCACCCAATAATTCCTCCTCCAATAATAATAACAATAATTCTCCTTCTTCTTCCAAACCAGTTGTTGCCTTCCCCTTCGCCAAACCCAAGTTCTATCCTTTCCCTCACTGTAAACCACACCAGTCTTGA 1158 0.456 MIMELGLSLGASSKSFTFMEKPQSNNNPQEVDFGLNTALSIGPMISNTSKSCDDDEEDEDREEAKKENHHSITTIKEDHHQAAASLSSSSSQLHHLLPHSSKPVPLSSFSWPPPDNCDEVGANNSVRGLKVKTKAEEEESEERTVLSSSPMSGASSFQVGLCIYSSNNNKSGNYYSNRKRKKMMNESEGDEGNYSYYDHQRGCSSRASDEDDVGVRGGGGGGGGGGTRKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLSEENRRLQKELQELRALKASNSNPFFMQLPATTLTMCPSCERLAPNNSSSNNNNNNSPSSSKPVVAFPFAKPKFYPFPHCKPHQS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g2105 385 Gene3D - 232 282 - -
Alju10g2105 385 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 64 360 - -
Alju10g2105 385 MobiDBLite consensus disorder prediction 130 144 - -
Alju10g2105 385 MobiDBLite consensus disorder prediction 41 153 - -
Alju10g2105 385 Pfam Homeodomain 228 282 IPR001356 GO:0003677
Alju10g2105 385 Coils Coil 290 320 - -
Alju10g2105 385 CDD homeodomain 228 285 IPR001356 GO:0003677
Alju10g2105 385 ProSitePatterns 'Homeobox' domain signature. 259 282 IPR017970 GO:0000981|GO:0006355
Alju10g2105 385 FunFam Homeobox-leucine zipper protein 18 216 289 - -
Alju10g2105 385 MobiDBLite consensus disorder prediction 78 97 - -
Alju10g2105 385 MobiDBLite consensus disorder prediction 345 364 - -
Alju10g2105 385 SMART HOX_1 226 288 IPR001356 GO:0003677
Alju10g2105 385 ProSiteProfiles 'Homeobox' domain profile. 224 284 IPR001356 GO:0003677
Alju10g2105 385 Pfam Homeobox associated leucine zipper 284 318 IPR003106 GO:0006355|GO:0043565
Alju10g2105 385 MobiDBLite consensus disorder prediction 173 193 - -
Alju10g2105 385 MobiDBLite consensus disorder prediction 62 77 - -
Alju10g2105 385 MobiDBLite consensus disorder prediction 179 193 - -
Alju10g2105 385 SUPERFAMILY Homeodomain-like 216 285 IPR009057 -
Alju10g2105 385 MobiDBLite consensus disorder prediction 205 230 - -
Alju10g2105 385 SMART halz 284 329 IPR003106 GO:0006355|GO:0043565
Alju10g2105 385 MobiDBLite consensus disorder prediction 345 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g2105 Alju-ChrAlju10 40550164 40552118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g2105 187 377 Homeobox Transcription Factor Family AT4G37790 58.031 3.20e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju10g2105 Homeodomain 1.9e-15 CL0123