Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g2078 ATGGCTCTATTCTCTTCCCTTTTCTCACCAACCCATCTTCTTTCCAATCACACTACAAAATCCATTTCAACCTCTTCAAGACTCTCTAATTCCCTCCTGAAATCTGTCTATACACAACCATTTGTCAAATCGACGTCGTCTCTAGTAGTTACAACACCCAGACACTACCGGAAACTTTTTGCTGTTGCTGAAGAAACTGTGGTCACTTCACCGGATCCGAAATCCGAGGCCGCGAGGAAGCTCTATATCGGGAACATTCCCCGCAATGTCGACAACAATGAGCTTACTCGGATTGTTGAAGAGCATGGTGCTGTTGAGAGAGCGGAGGTTATGTATGACAAATACTCTGGAAGGAGCCGTCGCTTTGCATTTGTTACAATGAAGACGTTTGAGGATGCAAATGCTGTAATTGAGAAGCTAAATGGCACTGAAATAGAAGGGCGTGAAATCAAAGTAAATATAACAGAAAAACCTTTGGCAACAGTTGATCTATCTATTCTCCAGGCAGAGGACACCGAATTCGTTGACAGTCCCCACAAAGTATATGTAGGAAATCTTGCAAAAACAGTAACAACAGATGTACTTAAAGACTTCTTCTCTTCAAAAGGAAATGTTGTTAGTGCCAAGGTTTCACGTATTCCTGGGACCTCAAAATCCAGTGGCTTTGGTTTTGTCTCATTTTCTTCAGCTGAGGATGTTGAAGCTGCAATCTCATCTTTCAACAATTCTTTGTTAGAAGGGCAACGAATTCGTGTGAACAAGGCATGA 768 0.4219 MALFSSLFSPTHLLSNHTTKSISTSSRLSNSLLKSVYTQPFVKSTSSLVVTTPRHYRKLFAVAEETVVTSPDPKSEAARKLYIGNIPRNVDNNELTRIVEEHGAVERAEVMYDKYSGRSRRFAFVTMKTFEDANAVIEKLNGTEIEGREIKVNITEKPLATVDLSILQAEDTEFVDSPHKVYVGNLAKTVTTDVLKDFFSSKGNVVSAKVSRIPGTSKSSGFGFVSFSSAEDVEAAISSFNNSLLEGQRIRVNKA 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g2078 255 PANTHER OS02G0815200 PROTEIN 18 254 - -
Alju10g2078 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 151 IPR000504 GO:0003723
Alju10g2078 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 251 IPR000504 GO:0003723
Alju10g2078 255 Gene3D - 167 255 IPR012677 -
Alju10g2078 255 FunFam 30S ribosomal protein 2, chloroplastic 166 255 - -
Alju10g2078 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 157 IPR000504 GO:0003723
Alju10g2078 255 SMART rrm1_1 180 253 IPR000504 GO:0003723
Alju10g2078 255 SMART rrm1_1 80 153 IPR000504 GO:0003723
Alju10g2078 255 SUPERFAMILY RNA-binding domain, RBD 175 255 IPR035979 GO:0003676
Alju10g2078 255 CDD RRM1_PSRP2_like 80 159 - -
Alju10g2078 255 SUPERFAMILY RNA-binding domain, RBD 70 156 IPR035979 GO:0003676
Alju10g2078 255 Gene3D - 55 160 IPR012677 -
Alju10g2078 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 255 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g2078 Alju-ChrAlju10 40230172 40233508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g2078 81 255 Eukaryotic Initiation Factors Gene Family AT2G23350 32.571 1.34e-16 77.0