Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g2071 ATGAGTGTTATGCATAGTCCCAGTGTTTTGAATTACTCAGATGGAGAGCTTAGGAGAAACCCTGAAATGGATTCTATTTACCCCTTGAATTCTGGATTAATGAGGTACAGTTCTGCTCCAAGCTCATTTCTGGCAACCCTGGTTCAGAATAGCCATGGATGTGTGAATGAGGAAGCTTATAGAAGCATAGATCAGCACAATCCATCTTCAAGTTCAGAAATGGAAGCCATGTTGGCCAAGTTGGTTTCTTCATCATCAAACAATGGATGGATCAAGCAGGAAGAAACAGGGGACTCTGTTTCAGAGGGAGAGAATGGGTATAATTCTAATTATGGTTCTCAGATGATTTACCAATCTCAGCAGACTCATCAAGCTGTTCAAGGCTTTCCAAATGGGTCTCTAGGTTCTTCTGGGAATTCTTTTGATGGTTCATTCAATTCCACTGAGTCCAAAATAAGAAGGCCTAATAATCTCTTTAGGCAGAAAAGTTCCCCTGCTGGATTGTTCAACAATTTCTCAGTTGAAAATGGTTTTGCAACATGGAGAGATGTGGGAAGCTTTAGAGGATGTGACCGTGTCTCAAATGGTCAAGCTTCTACATCAGCTAGTGGGTTAAATGAGAATAATACTTTGGCCTTTTCATCTAGGCCATCTTCTTGTTCTAGACAGTTGCCTGATATAGCTGAAGATGGGAATGAAACCCTAGAAGAAGAAATTTGTGTTGACAGCAGAAGAAATCTGAGAAATGACAACAATGGCAACAACAACAACAACACTGAATGTTACATTCCCGGCTTCACAAGTGACTTCTGGGATGGCCCTTCATTAAATGACACTAAAACAGCTAGTGACAATGATGAACTCATGTTCACTACTACTTCAAATGGTTTTGAAACTCAGAATGCTGATTTTGGGTATCAGAATGTTGGGTTGACTCATCATTTGAGTCTGCCAAGTTCTTGTACAAAGTCAAAGATGAGTGCCGTTGAGAAGTTTCTTCAAGTTCAAGGATCTGTTCCTTGTAAGATTCGAGCGAAAAGAGGTTTCGCCACTCACCCACGGAGCATTGCAGAGAGGGTAAGAAGAACAAGAATCAGTGAAAGAATAAAGAAGTTGCAAGATCTCTTCCCAAAATCTGAAAAGCAAACAAGCACAGCTGATATGTTGGATTTGGCAGTTGATTATATCAAAGACTTGCAGAAACAAGTTCAGATGCTTGCAGATACTAAAGCAAAGTGCAAGTGTTCAAGTAACCAGAAGCAGAACTCAGTGACTTGTAGCTAG 1284 0.405 MSVMHSPSVLNYSDGELRRNPEMDSIYPLNSGLMRYSSAPSSFLATLVQNSHGCVNEEAYRSIDQHNPSSSSEMEAMLAKLVSSSSNNGWIKQEETGDSVSEGENGYNSNYGSQMIYQSQQTHQAVQGFPNGSLGSSGNSFDGSFNSTESKIRRPNNLFRQKSSPAGLFNNFSVENGFATWRDVGSFRGCDRVSNGQASTSASGLNENNTLAFSSRPSSCSRQLPDIAEDGNETLEEEICVDSRRNLRNDNNGNNNNNTECYIPGFTSDFWDGPSLNDTKTASDNDELMFTTTSNGFETQNADFGYQNVGLTHHLSLPSSCTKSKMSAVEKFLQVQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVDYIKDLQKQVQMLADTKAKCKCSSNQKQNSVTCS 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g2071 427 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 349 399 IPR011598 GO:0046983
Alju10g2071 427 MobiDBLite consensus disorder prediction 195 223 - -
Alju10g2071 427 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 40 419 - -
Alju10g2071 427 MobiDBLite consensus disorder prediction 195 222 - -
Alju10g2071 427 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 352 415 IPR036638 GO:0046983
Alju10g2071 427 MobiDBLite consensus disorder prediction 127 157 - -
Alju10g2071 427 SMART finulus 355 405 IPR011598 GO:0046983
Alju10g2071 427 Gene3D - 351 424 IPR036638 GO:0046983
Alju10g2071 427 FunFam Transcription factor bHLH130 family 350 419 - -
Alju10g2071 427 Pfam Helix-loop-helix DNA-binding domain 355 400 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g2071 Alju-ChrAlju10 40186110 40188153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g2071 28 405 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 33.842 1.05e-54 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju10g2071 HLH 3.5e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju10g2071 10 40186110 40188153 Alju10g2071 10 40186110 40188153 ECH