Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g2055 ATGTGTCAAAGGGGACCAATGTACTATCAGAAAGGAATATGTGCTTTTGGTGGTCAATGCAAATATAAACATATCCAAACATCTCAAGCACGATCTTTGGAACATGGAAGCCAGCTCCTGAGTTTTGATAGGCATGGAAAGAGTATAAAACTTGAGCGTCAAGATTACCAAAAGAATTGTTATGCCAGTGAACCCAGTTCTGCTTTACCATCAAGGAAAAAGTGTTCTTGTGTTCCTGGAGAACCATGCGTACACTGTAAAAAGTTCTGTTTGTATCATTCTGAACCAAATGAGAAAGAGGAGCATTTGCAAACTTGTGAGAAAAAGGAAAAGTATCTTGAGACTTTGAATAGAAGTCAAGAAATAGAGTGCAGAATCTGCTATGAACGTGTTCTTTCAAAGCCTAAAGCAGATGAATGCAAGTTTGGTATTCTTTCTGAGTGCGATCATCCTTTCTGTTTATCATGTATCAGGAATTGGCGTAGTAGTGCCCTAACCTTAGTAGTAAGGTTCAGGTTGATTAATTGCAGGCATTTTGACTTCGGAAATGGATATTGCCCCTTTAGGAATATTTGTTTCTACAGGCATACTGTGAGGCCTGGTTCATATACATGGTTGCATCACAAACCACCACGACCACCACACAGATCATTTCTTATGAATTGGCTCGAACAATTTTTTCTGAGATTAGAGATGCCTCCAATTTTAGAGATTGTTTATGATATGGATCTGTCAGAGATAATGTGGTTACTGGAGTCACTAGTTAATTCAATGCAGCTTGATGCTGACTTCTCAAATGATGAAACTGACCCTTTTAGCTTGCCTGCAATGTCAGAAGTTTTAGATTCCAATTCAGACTCCATTGATTCTATAGACTTGAATCTATTTGAGCTTATACCATCAACTCATCAAGCTCTGAATGGTTCATGGTGGTTTGGTATTGAAGGTTTTGATGATCAAGAAATGGGCATTGTGCCTTCTCCGGCCGAGGAGGGTGGTTCATCTTCGCCTGGTTCTGATATGCCTCCATCGGAGTGTAACCGTCTGGTCATGACGTTCCTTAAGAATCAAATAAGGGGAATTGTTGAATCTGTGGAGCCATCATGA 1107 0.3984 MCQRGPMYYQKGICAFGGQCKYKHIQTSQARSLEHGSQLLSFDRHGKSIKLERQDYQKNCYASEPSSALPSRKKCSCVPGEPCVHCKKFCLYHSEPNEKEEHLQTCEKKEKYLETLNRSQEIECRICYERVLSKPKADECKFGILSECDHPFCLSCIRNWRSSALTLVVRFRLINCRHFDFGNGYCPFRNICFYRHTVRPGSYTWLHHKPPRPPHRSFLMNWLEQFFLRLEMPPILEIVYDMDLSEIMWLLESLVNSMQLDADFSNDETDPFSLPAMSEVLDSNSDSIDSIDLNLFELIPSTHQALNGSWWFGIEGFDDQEMGIVPSPAEEGGSSSPGSDMPPSECNRLVMTFLKNQIRGIVESVEPS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g2055 368 SUPERFAMILY RING/U-box 114 166 - -
Alju10g2055 368 ProSiteProfiles Zinc finger C3H1-type profile. 170 199 IPR000571 GO:0046872
Alju10g2055 368 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Alju10g2055 368 MobiDBLite consensus disorder prediction 322 346 - -
Alju10g2055 368 Pfam Zinc finger, C3HC4 type (RING finger) 124 163 IPR018957 GO:0046872
Alju10g2055 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 192 IPR013083 -
Alju10g2055 368 PANTHER MAKORIN-RELATED 173 219 IPR045072 GO:0000209|GO:0061630
Alju10g2055 368 ProSitePatterns Zinc finger RING-type signature. 148 157 IPR017907 -
Alju10g2055 368 ProSiteProfiles Zinc finger RING-type profile. 124 190 IPR001841 -
Alju10g2055 368 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 8 25 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g2055 Alju-ChrAlju10 39996090 39998507 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju10g2055 zf-C3HC4 2.3e-05 CL0229