Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g2045 ATGACAGATCCTCGGTCTTGGTTCAACTTCATCCCTCTTCTTCATCCTTCTCATCATCAATCCAATAACGCCTGTAATAATTCCTTATACCCTCAACTTCATGCTCATCAGTACTCAAATAATCACTGCACATCATCATCATCTTCCATTATTCATCAATACCAAAGCTCTTCTAGTTCTTCCACTTTAGACCATCCTCCAAATTCTCCTCCTCTCAAAGAAGCCCTTCCTCTCATAAACAATTTAAGCCTCAAAACAAGTGAACTCTCAAAGAGAGCCCTCGAAGAGGAAGAGGAAGAGGAAGAAAAGAATGAGAGAATGGAGACAGAATACGAAGAAGATGACGGCGAAGATGAAGACGATAGAGAAACTGTAACTGTAGCCCTAGGGATAGGGCTTCCTAATAGTATGAACACTTCATCTTCTTCTTCTTCTTTTCATATGGGGTCAAGCAGGCAGATCTCAAATTGTGTTGAAATGGCTGAAAAAGAGGAACTTGGTTTGGTTTCTGGATGCCCTTTGGAGAGATTTAACAAGGGTCAGTATTGGATTCCAACCCCTTCTCAGATTCTCATTGGCCCTACTCAGTTCTCTTGCCCTCTATGCTTAAAGACTTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCACAATACAGAAGAGGAGCAGATTCTCTAAAGGGGACACAACCAACGGGAATGCTAAGGCTACCATGTTATTGTTGTGCACCAGATTGCAAGCACAACATTGAGCACCCAAGGGCGAGGCCATTGAAGGACTTCAGGACTCTTCAGACTCACTACAAGAGAAAGCATGGCATCAAACCCTACATGTGTCGGAAATGCGCTAAGCCCTTCGCCGTCAAAGGCGATTGGCGGACCCACGAGAAGAACTGTGGCAAGCTCTGGTACTGTCTTTGTGGCTCTGACTTTAAACACAAGAGGTCTCTTAAAGATCACATCAAGGCCTTTGGTCATGGCCATGCTGCTTGTTGCTTTCATGATCAAGATGATGAACCTGCTTCTGAGATTGAACAAGATGGTCGCCTTGTTTTTCAATTGTGTTACTATATGTTTATGCTTGCTGCTTTGGATTTTGTTATCTTCTCTGAGAGAGAGTCACGGGACCTTCTGGCGATTCCTCTCCCTCTCTTCCTTTCACTTGCTCTGTTTATCTCTGCGACGAAAGGAGGAATTCGAATGGTTTTTGCGATCGGTCTCCCTCACAACCTTCTTCTGCCCAAAGCTTCCCGTGGAAAATTGAAGGTGAAATCGTGCTCTCAGATTCAGATTCAGACCAAGAAACGATGCTTGCGATGCAATACGCTTTACTCTGATCAGGAAAATTCTCCCACTGCTTGCGCTTTCCATGGCCACGCCAACGGGGAGAAGGGGCTGTTCTCATTGGCGCCACCACACCAAGGGATAGATGGGGAGTGGACGGACGAATCGGGAGTGATTGTTTACAAATGGAATGACAGAGACAACAGACCCAACACCGGTCGCCGCAATTGGAAGAGACGGTGGAGCTGCTGCGCTGAGTACGATGAGAATGCCTTTCCTTGTCGACGAGCCTCTCATGTTTCTTATGATGATGGTTTCACTTTGTATTAG 1626 0.452 MTDPRSWFNFIPLLHPSHHQSNNACNNSLYPQLHAHQYSNNHCTSSSSSIIHQYQSSSSSSTLDHPPNSPPLKEALPLINNLSLKTSELSKRALEEEEEEEEKNERMETEYEEDDGEDEDDRETVTVALGIGLPNSMNTSSSSSSFHMGSSRQISNCVEMAEKEELGLVSGCPLERFNKGQYWIPTPSQILIGPTQFSCPLCLKTFNRYNNLQMHMWGHGSQYRRGADSLKGTQPTGMLRLPCYCCAPDCKHNIEHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCAKPFAVKGDWRTHEKNCGKLWYCLCGSDFKHKRSLKDHIKAFGHGHAACCFHDQDDEPASEIEQDGRLVFQLCYYMFMLAALDFVIFSERESRDLLAIPLPLFLSLALFISATKGGIRMVFAIGLPHNLLLPKASRGKLKVKSCSQIQIQTKKRCLRCNTLYSDQENSPTACAFHGHANGEKGLFSLAPPHQGIDGEWTDESGVIVYKWNDRDNRPNTGRRNWKRRWSCCAEYDENAFPCRRASHVSYDDGFTLY 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g2045 541 MobiDBLite consensus disorder prediction 98 122 - -
Alju10g2045 541 FunFam Zinc finger protein WIP2 250 332 - -
Alju10g2045 541 ProSitePatterns Zinc finger C2H2 type domain signature. 199 219 IPR013087 -
Alju10g2045 541 SMART c2h2final6 281 301 IPR013087 -
Alju10g2045 541 SMART c2h2final6 197 219 IPR013087 -
Alju10g2045 541 SMART c2h2final6 307 330 IPR013087 -
Alju10g2045 541 MobiDBLite consensus disorder prediction 40 75 - -
Alju10g2045 541 PANTHER ZINC FINGER PROTEIN WIP2 35 350 IPR043584 GO:0003700|GO:0010468
Alju10g2045 541 ProSiteProfiles Zinc finger C2H2 type domain profile. 197 224 IPR013087 -
Alju10g2045 541 MobiDBLite consensus disorder prediction 40 67 - -
Alju10g2045 541 Gene3D Classic Zinc Finger 196 219 - -
Alju10g2045 541 MobiDBLite consensus disorder prediction 90 122 - -
Alju10g2045 541 SUPERFAMILY beta-beta-alpha zinc fingers 265 301 IPR036236 -
Alju10g2045 541 Coils Coil 79 117 - -
Alju10g2045 541 Gene3D Classic Zinc Finger 262 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g2045 Alju-ChrAlju10 39875255 39883373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g2045 159 350 C2H2 Transcription Factor Family AT3G57670 78.351 4.25e-114 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju10g2045 None None None