Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g2031 ATGAAAAAGCTAACTGTTCATACAGAAGATTCTTTTTCCAGCCTACTGGAACTTGCTGCTAACAATGATGTTGAAGGTTTTAAGCTACTGCTAGATAGGGATGTTTCTTCAATAAATGAAGTTGGGCTTTGGTATTGTCGCCAGATTGGGTCAAAACAAATTATTCTCGACGATAGAACTCCATTAATGGTTGGTGCAACCTATGGCAGTATTGATGTTGTTAAGCTTCTACTCTCTTATCCAGAGGCCAATGTTGATTTCACATGTGGGATAAGCAAGAGTACTGCCCTTCACTGTGCTGCTTCAGGCGGATCAAATAATGCGGTTGAAGTTGTGAAGCTTCTTTTAGAAGCTGGTGCTGATCTTAGTTGCAAGGATGCTAGTGGAAATCGTCCTGTTGATGTTATTGTTGTTCATCCGAAGCTGCTAGTCATGAGAGCAATTCTGGAGGAACTTCTTTCTGATAGTGCGTCTCATGACAACTCTGGTGACTGCTCTATTCCAGTACCTGTTAATCCATCAAGTCCTGGTTTACCTGCCCATTTATTTTCTCCCGATAATGGATTGCCATCCTCTCCTTCGGGCTCACCTTCTTCTCCAATGGCCTCAAAGTTTGCTGATACCCCTGTTATCTCTACCTCGGAGAAGAAAGAGTATCCAATTGATCCATCACTTCCTGATATAAAAAACAGCATTTATGCAACGGATGAGTTTCGCATGTTCTCATTCAAGGTTCGTCCTTGCTCCCGTGCATACTCTCATGATTGGACTGAGTGTCCTTTCGTTCATCCAGGAGAGAATGCTCGTAGGAGAGACCCCAGAAAATTCCATTACAGTTGTGTACCATGCCCTGATTTTCAGAAGGGTGCGTGTAGGCGAGGGGATATGTGTGAATATGCACATGGAGTATTTGAATGCTGGCTACACCCTGCTCAGTATCGCACTCGACTCTGCAAAGATGGCACAAATTGCAACAGAAGGGTGTGTTTTTTTGCTCACACAGCAGAAGAGTTGCGTCCGCTTTATGTGTCCACCGGATCTGCTGTCCCTTCTCCAAGAGCATCTGCGTCTGCTCCCAATGTCATGGATATGGCTGCTGCAATGAACCTGTTACCTGGTTCTCTTTCGTCAGTGTCTTCTATGTCTCCATCTCACTTTACGCAGCCGATGTCTCCATCTGGTAATGGCATTTCACACTCATCTGCAGCCTGGCCACAGCCCAATGTGCCAGCCCTTCATCTTCCGGGAAGTAATCTCCAATCTAGTCGTTTGAGATCTTCTCTTAGTGCTCGTGATATTCCACCACACGACTTGAACATGTTGCCAGAATTTGATGGCCAGCAACACCTTTTGAATGATATGGGCTGTTTCTCACAGCCTCGTTCTGGTGCTGTTTCTTTGAGCCGATCTGGTCGGTCCAAGACGCTAACTCCATCTAATCTTGAAGAGCTATTTTCTAATGAAATTTCTTCGTCTCCTCGGTATTCTGATCCAGCAGCAGGTTCTGTTTTTTCTCCCACACACAAATCTGCTGTTCTCAATCAGTTTCAACAGCTTCAAAGTATGCTGTCACCCATAAATACAAATGTTTTGTCTCCTAAGAATGCTGAGCATCCTCTATTGCAAGCTCCATTCGGAGTGTCTTCTCCTGGAAGGATGTCACCCAGAAGTGTGGATCCAATATCTCCCATGAGCTCTCGGTTATCTCCATTTGCTCAGCGTGAGAAGCAGCAGCAGCAACAGCTGCGAAATCTTAGTTCAAGGGATCTTGGTTCCAAAATTCCTGCTTCAGTTGTTGGTTCTCCTGGAAACTCATGGTCTAATTGGGGATCTCCTACTGGGAAAGTTGATTGGTCAATGAATGGAGATGAATTGGGTCGATTGCGAAAGTTGTCTTCATTTGAGCATGGGAACAATGGGGAAGAGCCTGATCTATCTTGGGTTCAGTCCCTTGTCAAGGAATCCCCACCTGAAATGATGAAAGAGAAGCTGGCTGCTTCTGGTCCCATGGCATCTGGGGAAAAACTGAATTCAATATCTCAAGTTGAATCAATTGATAATTCTGTGGTAGGAGCTTGGCTTGAGCAAATGCAGCTGGATCAGCTTGCTGTCTAG 2115 0.4501 MKKLTVHTEDSFSSLLELAANNDVEGFKLLLDRDVSSINEVGLWYCRQIGSKQIILDDRTPLMVGATYGSIDVVKLLLSYPEANVDFTCGISKSTALHCAASGGSNNAVEVVKLLLEAGADLSCKDASGNRPVDVIVVHPKLLVMRAILEELLSDSASHDNSGDCSIPVPVNPSSPGLPAHLFSPDNGLPSSPSGSPSSPMASKFADTPVISTSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFQKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCNRRVCFFAHTAEELRPLYVSTGSAVPSPRASASAPNVMDMAAAMNLLPGSLSSVSSMSPSHFTQPMSPSGNGISHSSAAWPQPNVPALHLPGSNLQSSRLRSSLSARDIPPHDLNMLPEFDGQQHLLNDMGCFSQPRSGAVSLSRSGRSKTLTPSNLEELFSNEISSSPRYSDPAAGSVFSPTHKSAVLNQFQQLQSMLSPINTNVLSPKNAEHPLLQAPFGVSSPGRMSPRSVDPISPMSSRLSPFAQREKQQQQQLRNLSSRDLGSKIPASVVGSPGNSWSNWGSPTGKVDWSMNGDELGRLRKLSSFEHGNNGEEPDLSWVQSLVKESPPEMMKEKLAASGPMASGEKLNSISQVESIDNSVVGAWLEQMQLDQLAV 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g2031 704 ProSiteProfiles Zinc finger C3H1-type profile. 282 304 IPR000571 GO:0046872
Alju10g2031 704 FunFam Zinc finger CCCH domain-containing protein 66 235 303 - -
Alju10g2031 704 SUPERFAMILY Ankyrin repeat 6 150 IPR036770 -
Alju10g2031 704 SMART ANK_2a 57 87 IPR002110 GO:0005515
Alju10g2031 704 SMART ANK_2a 10 40 IPR002110 GO:0005515
Alju10g2031 704 SMART ANK_2a 92 124 IPR002110 GO:0005515
Alju10g2031 704 MobiDBLite consensus disorder prediction 382 420 - -
Alju10g2031 704 SMART c3hfinal6 312 335 IPR000571 GO:0046872
Alju10g2031 704 SMART c3hfinal6 277 303 IPR000571 GO:0046872
Alju10g2031 704 MobiDBLite consensus disorder prediction 382 405 - -
Alju10g2031 704 Gene3D - 277 340 - -
Alju10g2031 704 PANTHER UNKEMPT FAMILY MEMBER 17 655 IPR045234 -
Alju10g2031 704 MobiDBLite consensus disorder prediction 545 610 - -
Alju10g2031 704 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Alju10g2031 704 Gene3D - 2 168 IPR036770 -
Alju10g2031 704 MobiDBLite consensus disorder prediction 187 205 - -
Alju10g2031 704 Pfam Ankyrin repeats (3 copies) 18 126 IPR002110 GO:0005515
Alju10g2031 704 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Alju10g2031 704 MobiDBLite consensus disorder prediction 176 205 - -
Alju10g2031 704 MobiDBLite consensus disorder prediction 559 591 - -
Alju10g2031 704 Pfam CCCH-type zinc finger 282 302 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g2031 Alju-ChrAlju10 39526647 39528761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g2031 9 701 C2H2 Transcription Factor Family AT5G12850 55.728 0.0 703
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju10g2031 Ank_2 5.8e-11 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju10g2031 10 39526647 39528761 Alju10g2031 10 39526647 39528761 ECH