Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g2021 ATGATTTCATCTTCACTTTCTCCAGTTGGTGGGAATGTCGACAAAGAGCACCAAAACAACAAATATGTTATGTCGTCTTCAACACATGCCATGGGCAAACACCTTGGTTCAAATCCCGAAGCCGAACTTATCGGTCATTCCATTGTTTTAACTTCTTACCCTTACTCAGATGCACAGTATGCTGGAATCTTAACATCTCATGGGCCTCAAAATATGATAAATCCTCATTTGTACGGAATGCACCATGCTAGAATGCCTTTGCCAATTGAGATGGAAGAAGAGCCTGTTTATGTCAATGCAAAGCAGTACCATGGTATCTTAAGGCGAAGGCAGTCACGTGCTAAGGCCGAGCTTGAAAGGAAAGTTATTAAAGCTAGAAAGCCATATCTTCACGAATCTCGCCACCTACATGCTATGAGAAGGGCAAGAGGGTGTGGGGGCCGCTTTCTGAATACAAAGAAGCTTGAAAACAACAATTCCAATGCTTCAGAAAAAGACAAGAACAATACTTATTTGGTCAAGAGAGGGGAAGCATGCAGATTCATGGAGCCTCTAATATGGCTATCAAATGAAAATCTTCTGAGTTGGTGGATTTTCTCAGGTGGAGAGGCTGAAGGCTTCTCTTCCATCAAGAAAGGAGGAAATCCACCCTCACAGGCAACTCATTCTTGGCTCAGTTACTTTGGTTAG 690 0.4275 MISSSLSPVGGNVDKEHQNNKYVMSSSTHAMGKHLGSNPEAELIGHSIVLTSYPYSDAQYAGILTSHGPQNMINPHLYGMHHARMPLPIEMEEEPVYVNAKQYHGILRRRQSRAKAELERKVIKARKPYLHESRHLHAMRRARGCGGRFLNTKKLENNNSNASEKDKNNTYLVKRGEACRFMEPLIWLSNENLLSWWIFSGGEAEGFSSIKKGGNPPSQATHSWLSYFG 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g2021 229 ProSitePatterns NF-YA/HAP2 subunit signature. 97 117 IPR018362 GO:0003677|GO:0016602
Alju10g2021 229 Gene3D - 92 154 - -
Alju10g2021 229 SMART cbf3 91 152 IPR001289 GO:0003700|GO:0006355
Alju10g2021 229 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 94 149 IPR001289 GO:0003700|GO:0006355
Alju10g2021 229 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 16 177 IPR001289 GO:0003700|GO:0006355
Alju10g2021 229 PRINTS CCAAT-binding transcription factor subunit B signature 126 149 IPR001289 GO:0003700|GO:0006355
Alju10g2021 229 PRINTS CCAAT-binding transcription factor subunit B signature 95 117 IPR001289 GO:0003700|GO:0006355
Alju10g2021 229 ProSiteProfiles NF-YA/HAP2 family profile. 92 152 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g2021 Alju-ChrAlju10 39416543 39419818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g2021 39 165 CCAAT-HAP2 Transcription Factor Family AT3G20910 56.250 5.41e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Alju10g2021 CBFB_NFYA 1.3e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju10g2021 10 39416543 39419818 Alju10g2021 10 39416543 39419818 ECH