Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1978 ATGGCGTGCATAAAAGGGGTCAATCGATCGGCGTCCGTGGCCCTGGCCCCGGATGCACCATACATGGCGGCCGGAACCATGGCGGGGGCAGTTGATCTGTCTTTTAGCTCCTCCGCTAATCTGGAAATATTTAACCTTGATTTCCAGTCCGATGATCAGGAACTGCCCTTGGTCGCGGAGTGCACAAGCTCAGAGCGGTTCAATCGTCTGTCTTGGGGAAAGAGTAGTTCTGCCTCTGAAGGTTTCTCCCTTGGGCTTATTGCGGGTGGGCTGGTCGATGGTAATATTGGCCTCTGGAATCCTCTCACTCTGATCCGTTCGGAGGCAAAAGAAAGTGCTTTTCTTCAACATCTTGTGAGGCATAAAGGGCCAGTCCGTGGTCTTGAGTTTAATACCATTTCTCCAAATCTTCTTGCATCTGGGGCTGAGGATGGTGAAATTTGCATATGGGATTTGGCCAATCCTTCAGAGCCATCCCATTTTCCACCTCTCAGGGGTAGTGGCTCTGCTTCCCAGGGTGAAATTTCATTTGTATCTTGGAATAGCAAAGTCCAACACATATTAGCATCAACTTCATTCAATGGGACTACTGTGGTCTGGGACCTAAGGAAGCAAAAGCCAGTGATAAGCTTTGCAGACTCAGTTAGAAGACGATGTTCAGTTTTGCAGTGGAATCCTGATTTTGCCACTGAGCTAGTTGTTGCATCGGATGAGGATGGTTCTCCTGCCGTGAGGCTTTGGGATATGAGGAATATAATGGCACCAATTAAAGAGTTTGTGGGACACAGTAGAGGTGTAATTGCCATGTCATGGTGTCCCTATGATAGCTATTATCTGCTCACCTGTGCCAAAGATAATCGAACCATATGCTGGGACACAACTTCTGGAGAGATTTTACGTGAATTGCCTGCTGGGACCAACTGGAATTTCGATGTGCATTGGTATCCTAAAATACCAGGAGTGATTTCAGCATCTTCCTTTGACGGAAAAATTGGCATCTACAATGTTGAGGGTTGCAGTCGCTATGGTACTGGACAAAATGAATTTGGTGCAGTATCTCTAAGAGCTCCAAAATGGTATAAACGCCCAGTTGGGGTGTCTTTTGGTTTTGGTGGCAAGCTTGTATCATTTAATACGAAGTCATCTGCCACAAATGCTCCTGCTGGGTCTTCAGAGGTTTATGTGCATAATATGGTTACTGAACATACTCTATTGAGTCGTTCCTCTGAATTTGAAGCTGCAATACATAATGGGGAAAGGTCTTTGCTGAGGGTTTTATGTGACAAAAAGTCTCACGAATCAGAATCTGATGAAGAAAGAGAAACATGGGGCTTCTTAAAGGTTATGTTTGAAGATGATGGGTCAGCACGAACGAAGCTACTCGAACACCTTGGTTTTACTGTACCTGTTGAAGAAAAAGACACAGCTGTAGATGATCTTGTACAAGAAGTCAGTGCTATTGGACTTGATGAGGCAGCTGTTGATAAAGTAGGACTTGGGCCTTCTAATGAATCTACTGTTTTCCCAGATACTGGGGAGGATTTCTTTAACAATCTTCCTAGTCCCAAAGCTGAGACACCTTTATCTACTTCTGGTGGTAATGTGGATTATGCCAATGGTTTGGACAAAACCGAAGAAGAGTTGGAAGTGGAGGAGATCAATGATCCTACATTTGATGATAGTGTTCAGCGTGCATTGGTTGTTGGGGACTACAAAGGGGCAGTTACACAATGCATATCTGCAAATAAGTGGGCTGATGCTCTAGTTATTGCTCATGTAGGTAGTGCTTCACTATGGGAAAGTACGCGAGAGCAATACCTTAAGAAAATCAGATCACCATACTTGAAGATTGTCTCTGCGATGGTGAGCAAGGATCTCTTAAGCCTTGTGAACACCAGGCCTCTAAAATTTTGGAAAGAGACTCTTGCTCTTCTTTGTAGTTTTGCTCAGAGAGATGAATGGACTATGCTTTGTGACACACTTGCTTCAAAACTCATGGGAGCTGGAAATACATTAGCTGCAACTCTCTGTTATATATGTGCTGGCAATATCGATAAAACAGTTGAAATTTGGTCAAAGAATCTGCAGACTGCACATGAAGGAAAATCGTATGTTGATGTTCTCCAGGATTTGATGGAAAAAACTATTGTTCTTGCCTTAGCAACTGGGCAGAAGCAATTTAGTGCATCTCTTTGCAAGCTTGTTGAGAAATATGCTGAAATTTTAGCAAGTCAAGGATTGTTGACTACTGCAATGGAGTATATTAAGCTCTTGGGTTCTGCTGAACTGTCACCTGAACTTCTAGTCCTAAAAGATCGGATTTCTCTTTCTACACAACCGGAGAAAGAAGTCCAGACTACTGAGCTTGAAAATACTCAGCCACAGGGTGGATCATTTTATGGCGCTGATAATTCCAATTACAGTAGAAATTATTATCAGGAGTCAGTTTCACCACAAGTACAGCATGGTGCTTCTGGAATTCCATATGATGAAAGCTATCAACAGCCTTTTGATCCTTCATATGGAAGAGGGTATACTGGTTCTGCTCCATTTCAGCAACCTCAACAACCTAGTTTGTTTGTTCCATCACAGGCACCTCAGGTTCACCATGCACCTCAGCCAAACTTCTCTGCTGCTCCTGTTACACAACCTCCTATGAGATCTTTTGTTCCTCACACTCCTCCAGCACTAAGAAATGTCGAGCAATATCAGCAGCCAACATTGGGTTCTCAGTTGTATCCTGCAGCTACCAATCCACCTTACCAACCCACACCCCCTGCCACATCCCAAATGGGTTTGGTTCATGGCCAGAAGTTGCCACAGGCTGTGGTGCCAACCCCAAATCCTAGGGGATTCGCACCAGTCTCCAGTTCTGGTGTCGCACATAGACCTGGCATTGGATCAATTCAGCCTCCCAGTCCCCCTCAGGCAGCTCCTGCACAGCCAGCTCCAGCACCAGCTGCTCCACCTCCAACTGTGCAAACAGCTGATACTTCGAATGTGCCTGTGCATCAAAAGCCCATTGTCACAACGTTGACAAGGCTTTTCAACGAGACATCAGAAGTGCTGGGGGGTGCACGTGCGAATCCAGCCAAAAAGCGGGAGATAGAAGACAACTCAAAGAAAATCGGAGGATTATTTGCGAAATTGGACAGTGGGGACATCTCTAAAAATGCCGCAGACAAGCTCCTTCAGCTGTGTCAGGCATTAGACAAAGGCGATTTCAGTACAGCCCTACAAATTCAGGTATTGCTTACTACAACCGAATGGGATGAATGCCAGTCCTGGCTCGGTTCGCTGAAGCGAATGATCAAGACAAGGCAGAGTGTGAGATAA 3336 0.4514 MACIKGVNRSASVALAPDAPYMAAGTMAGAVDLSFSSSANLEIFNLDFQSDDQELPLVAECTSSERFNRLSWGKSSSASEGFSLGLIAGGLVDGNIGLWNPLTLIRSEAKESAFLQHLVRHKGPVRGLEFNTISPNLLASGAEDGEICIWDLANPSEPSHFPPLRGSGSASQGEISFVSWNSKVQHILASTSFNGTTVVWDLRKQKPVISFADSVRRRCSVLQWNPDFATELVVASDEDGSPAVRLWDMRNIMAPIKEFVGHSRGVIAMSWCPYDSYYLLTCAKDNRTICWDTTSGEILRELPAGTNWNFDVHWYPKIPGVISASSFDGKIGIYNVEGCSRYGTGQNEFGAVSLRAPKWYKRPVGVSFGFGGKLVSFNTKSSATNAPAGSSEVYVHNMVTEHTLLSRSSEFEAAIHNGERSLLRVLCDKKSHESESDEERETWGFLKVMFEDDGSARTKLLEHLGFTVPVEEKDTAVDDLVQEVSAIGLDEAAVDKVGLGPSNESTVFPDTGEDFFNNLPSPKAETPLSTSGGNVDYANGLDKTEEELEVEEINDPTFDDSVQRALVVGDYKGAVTQCISANKWADALVIAHVGSASLWESTREQYLKKIRSPYLKIVSAMVSKDLLSLVNTRPLKFWKETLALLCSFAQRDEWTMLCDTLASKLMGAGNTLAATLCYICAGNIDKTVEIWSKNLQTAHEGKSYVDVLQDLMEKTIVLALATGQKQFSASLCKLVEKYAEILASQGLLTTAMEYIKLLGSAELSPELLVLKDRISLSTQPEKEVQTTELENTQPQGGSFYGADNSNYSRNYYQESVSPQVQHGASGIPYDESYQQPFDPSYGRGYTGSAPFQQPQQPSLFVPSQAPQVHHAPQPNFSAAPVTQPPMRSFVPHTPPALRNVEQYQQPTLGSQLYPAATNPPYQPTPPATSQMGLVHGQKLPQAVVPTPNPRGFAPVSSSGVAHRPGIGSIQPPSPPQAAPAQPAPAPAAPPPTVQTADTSNVPVHQKPIVTTLTRLFNETSEVLGGARANPAKKREIEDNSKKIGGLFAKLDSGDISKNAADKLLQLCQALDKGDFSTALQIQVLLTTTEWDECQSWLGSLKRMIKTRQSVR 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1978 1111 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 118 152 - -
Alju10g1978 1111 FunFam Protein transport protein SEC31 homolog B 997 1111 - -
Alju10g1978 1111 SMART WD40_4 54 100 IPR001680 GO:0005515
Alju10g1978 1111 SMART WD40_4 111 151 IPR001680 GO:0005515
Alju10g1978 1111 SMART WD40_4 204 248 IPR001680 GO:0005515
Alju10g1978 1111 SMART WD40_4 295 335 IPR001680 GO:0005515
Alju10g1978 1111 SMART WD40_4 252 292 IPR001680 GO:0005515
Alju10g1978 1111 SMART WD40_4 161 201 IPR001680 GO:0005515
Alju10g1978 1111 MobiDBLite consensus disorder prediction 779 804 - -
Alju10g1978 1111 Gene3D - 1 337 IPR015943 GO:0005515
Alju10g1978 1111 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 301 IPR001680 GO:0005515
Alju10g1978 1111 MobiDBLite consensus disorder prediction 968 991 - -
Alju10g1978 1111 Pfam Sec23-binding domain of Sec16 562 760 IPR024298 -
Alju10g1978 1111 Pfam WD domain, G-beta repeat 115 151 IPR001680 GO:0005515
Alju10g1978 1111 Gene3D Functional domain of the splicing factor Prp18 998 1111 - -
Alju10g1978 1111 ProSiteProfiles Trp-Asp (WD) repeats profile. 118 160 IPR001680 GO:0005515
Alju10g1978 1111 MobiDBLite consensus disorder prediction 819 855 - -
Alju10g1978 1111 FunFam Protein transport protein SEC31 homolog B 353 778 - -
Alju10g1978 1111 FunFam Protein transport protein SEC31 homolog B 1 337 - -
Alju10g1978 1111 Gene3D - 352 778 - -
Alju10g1978 1111 MobiDBLite consensus disorder prediction 941 1005 - -
Alju10g1978 1111 SUPERFAMILY WD40 repeat-like 12 337 IPR036322 GO:0005515
Alju10g1978 1111 ProSitePatterns Trp-Asp (WD) repeats signature. 138 152 IPR019775 -
Alju10g1978 1111 PANTHER SEC31-RELATED PROTEIN 3 1108 IPR040251 GO:0006888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1978 Alju-ChrAlju10 38746175 38756379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1978 110 352 Miscellaneous Gene Families AT5G08390 25.306 8.35e-14 74.3