Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju10g1931 | ATGAGCCACGGGCTCATCTATTCTCTACCAACTTCCCTCCTATCTTTTCCCTTCTTTCCCTCTCTTCGCGACCCAACCTCCTGCGTTTCATTTCTTATTCTCTCTCTGCAATGGCCTTTTGATCAAGTCATCATTTTAGGACTGGTGGTTGCTTGTACTAGCATGGCTTCTAGCAATGCTTTCTTCGATGATATACGGAGCAAATCTGAGGTTGATCCCCCTTCAAATGAAGAGCCAATGGATATCAGCGAGCTAGTGAATGATCCTGCACAAACTGCACTAAAATCTAATGTGGCTGTTACAAGCAGTGTTCATGAACTTTTAGAGTGTCCCGTGTGCTTGAATGCAATGTACCCTCCAATCCACCAGTGTTCAAATGGCCATACTTTGTGCTCAGGTTGCAAACCCAGGGTCCACAACCGGTGTCCTACCTGTAGACATGAGCTTGGCAATATTAGATGCTTGGCATTGGAGAAGGTGGCTGCATCTTTGGAACTTCCATGTAAATACCAGGCTTTTGGGTGCATGGGCATATATCCATATTATTGCAAGTTGAAGCATGAATCTCAATGTGCATATAGACCATATAACTGTCCATATGCTGGTTCAGAATGCTCTGTCATCGGTGATATTCCTTTTCTGGTGGCCCATTTGAAAGACGATCACAAGGTGGACATGCATAATGGGAGCACTTTTAATCATCGTTATGTCAAATCAAACCCACAAGAAGTTGAAAACGCAACATGGATGCTTACGGTCTTCAGCTGCTTTGGTCAATATTTTTGTCTACACTTTGAAGCATTTCAGCTGGGGATGGCTCCAGTCTACATAGCCTTCTTGCGATTTATGGGCGATGATAACGAGGCAAAGAACTACAGCTACAGTCTTGAGGTTGGTGGTAACGGGAGGAAGATGACTTGGCAGGGTGTGCCCAGAAGCATCAGGGACAGCCACCGCAAGGTTCGCGACAGTTTTGACGGTCTTATCATCCAGAGGAACATGGCTCTCTTCTTTTCGGGGGGAGACAGGAAGGAATTGAAGCTAAGGGTTACAGGGAGAATTTGGAAAGAGCAATGA | 1077 | 0.454 | MSHGLIYSLPTSLLSFPFFPSLRDPTSCVSFLILSLQWPFDQVIILGLVVACTSMASSNAFFDDIRSKSEVDPPSNEEPMDISELVNDPAQTALKSNVAVTSSVHELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQAFGCMGIYPYYCKLKHESQCAYRPYNCPYAGSECSVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMTWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ | 358 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju10g1931 | 358 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 93 | 357 | - | - | |
| Alju10g1931 | 358 | Pfam | Seven in absentia protein family | 152 | 351 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
| Alju10g1931 | 358 | CDD | RING-HC_SIAHs | 108 | 146 | - | - | |
| Alju10g1931 | 358 | SUPERFAMILY | TRAF domain-like | 163 | 355 | - | - | |
| Alju10g1931 | 358 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 163 | 218 | IPR013083 | - | |
| Alju10g1931 | 358 | CDD | Sina | 224 | 352 | - | - | |
| Alju10g1931 | 358 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 68 | 161 | - | - | |
| Alju10g1931 | 358 | SUPERFAMILY | RING/U-box | 104 | 151 | - | - | |
| Alju10g1931 | 358 | ProSiteProfiles | Zinc finger SIAH-type profile. | 163 | 223 | IPR013010 | GO:0008270 | |
| Alju10g1931 | 358 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 162 | 218 | - | - | |
| Alju10g1931 | 358 | ProSiteProfiles | Zinc finger RING-type profile. | 110 | 146 | IPR001841 | - | |
| Alju10g1931 | 358 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 219 | 351 | - | - | |
| Alju10g1931 | 358 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 219 | 351 | IPR008974 | GO:0005515 | |
| Alju10g1931 | 358 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 67 | 162 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju10g1931 | Alju-ChrAlju10 | 37826775 | 37832703 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju10g1931 | 101 | 358 | C3H Transcription Factor Family | AT2G41980 | 79.457 | 1.21e-160 | 450 |