Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju10g1908 | ATGGTTGGTCTTCAAAATTCCACCCAGCTCATCCTAAGAATATGTGCAATCGTCGTGAAAGGTCATTGGAGTAATCTGTTGAAGCTGGAGAAAGCTTCTGCTCTCACATCTTCCACCATTCACCAGGTACTTCTGCAACTATCTTTCCATGGCTCTGCTCCATCCTATTCCTTCTCATTCTTCAAATGGGTCGAGACAATTCCAAATTATAAGCACTCTTTGCAATGTTCATGGTCCATGCTTCATATCCTCGTAAAGCATAAACATTATAGAACTGCTCAAGAGATGCTTGAAAAAATTGCCCACAGGGATTTTCTTTCATCACGGTCAGTTTTGAGAACGTTGATTGAAACTCAACATGAACCTGAAGTGAATTCACATATATTGAGCTGGCTTGTAATACATTATGCAAAATCAAAGATGACTGATGATGCCATTCAGGTTTTTGAGCAGATGAGGTTATATAATTTGAACCCTCATTTGCATGCCTGTACTGTGCTTCTGAATTCGTTGGTCAAGGATGGGATTACTAACATGGTATGGAAGGTTTACAAACAAATGGTTAAAGCTGGTGTTTTTCCTAATATGCATATCTATAATGTATTAATCCATGCTTGTTCCAAATCAGGAGATGTAGAGAGGGCAGAAAATATACTGAATGAGATGGAAGTGAAGGGTGTGTATCCTGATATTTTCACTTACAATACTTTGATATCATTATATTGCAAGAGAAGTATGCACTACGAGGCTTTATCTATCCAGGAAAGAATGGAAAGAGAAGGAATAAATCTTGACATTGTTAGTTACAATTCTCTTATTTATGGATTTTGTAGAGAGGGTAGGATGAGAGAAGCCATGAGGATATTCAGCAACATCAAAGGTGCAATTCCCAATACTGTTACATACACTACATTGATTGATGGGTATTGTAAATCAGATGACTTGAAGCAAGCTCTGAAAACGTGTGAGATGATGCAGGCTAAGGGATTGTACCCTGGAGTTGTTACTTATAATTCAATTTTGCGTAAGCTGTGTCAGGATGGCAGAATAAGAGAGGCAAATAAACTCTTGGTTGAGATGAGTGAAAGAAAAATTCAGCCTGATAATGTCACATGTAACACATTGATTAATGCTTATTGCAAAATAGGAGATATGAAATCTGCATTGAAATTTAAGAACAAGATGTTAGAGGCTGGATTGAAACCTGACCCATATACGTATAAGGCATTGATTCATGGGTTCTGCAAGATAAAAGAGCTGGAAAGAGCCAAGGAGATGTTGTTTTCCATGCTTGAGGCTGGGTTTTCCCCCAATTATTACACATATTCATGGATCGTAGATGGTTACTGCAATAAAGACAATGAAGATGCAGTTGTTACACTCCCTGATGAGTTTCTTAGAAGAGGTCTTTGTATTGATGTTTCAATATACAGGGCTTTAATAAGAAGGTTATGTAAGTTAGAAAGGATCCCAAATGCTTTGAAGTTATTTAATCTTATGGAAGGGAGGGGTATATCAGGTGACAGCGTTGTCTACACAAGTCTTGCTTATGCTTATTGGAAATTAGGGAATGCAAAGTTTGCATCAAATATATTAGAAGAGATGACCAGAAGGAGGTTGATGATAACAAGCAAAATCTATAAATGTTTTGGTAATCCTCTTGGTATTGAAAACGACACTTCATGTTCATTCTGGAATCATGTAATGGAAAGGGGCCTTATGTCAAGAAATACAATGAATAAAATAAAGCAAATGGAATTATGA | 1764 | 0.3707 | MVGLQNSTQLILRICAIVVKGHWSNLLKLEKASALTSSTIHQVLLQLSFHGSAPSYSFSFFKWVETIPNYKHSLQCSWSMLHILVKHKHYRTAQEMLEKIAHRDFLSSRSVLRTLIETQHEPEVNSHILSWLVIHYAKSKMTDDAIQVFEQMRLYNLNPHLHACTVLLNSLVKDGITNMVWKVYKQMVKAGVFPNMHIYNVLIHACSKSGDVERAENILNEMEVKGVYPDIFTYNTLISLYCKRSMHYEALSIQERMEREGINLDIVSYNSLIYGFCREGRMREAMRIFSNIKGAIPNTVTYTTLIDGYCKSDDLKQALKTCEMMQAKGLYPGVVTYNSILRKLCQDGRIREANKLLVEMSERKIQPDNVTCNTLINAYCKIGDMKSALKFKNKMLEAGLKPDPYTYKALIHGFCKIKELERAKEMLFSMLEAGFSPNYYTYSWIVDGYCNKDNEDAVVTLPDEFLRRGLCIDVSIYRALIRRLCKLERIPNALKLFNLMEGRGISGDSVVYTSLAYAYWKLGNAKFASNILEEMTRRRLMITSKIYKCFGNPLGIENDTSCSFWNHVMERGLMSRNTMNKIKQMEL | 587 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju10g1908 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 125 | 159 | IPR002885 | - | |
| Alju10g1908 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 298 | 332 | IPR002885 | - | |
| Alju10g1908 | 587 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL | 71 | 385 | - | - | |
| Alju10g1908 | 587 | Gene3D | Tetratricopeptide repeat domain | 360 | 461 | IPR011990 | GO:0005515 | |
| Alju10g1908 | 587 | Gene3D | Tetratricopeptide repeat domain | 462 | 576 | IPR011990 | GO:0005515 | |
| Alju10g1908 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 333 | 367 | IPR002885 | - | |
| Alju10g1908 | 587 | SUPERFAMILY | HCP-like | 302 | 445 | - | - | |
| Alju10g1908 | 587 | NCBIfam | pentatricopeptide repeat | 232 | 265 | IPR002885 | - | |
| Alju10g1908 | 587 | NCBIfam | pentatricopeptide repeat | 163 | 195 | IPR002885 | - | |
| Alju10g1908 | 587 | NCBIfam | pentatricopeptide repeat | 405 | 438 | IPR002885 | - | |
| Alju10g1908 | 587 | NCBIfam | pentatricopeptide repeat | 335 | 368 | IPR002885 | - | |
| Alju10g1908 | 587 | NCBIfam | pentatricopeptide repeat | 267 | 291 | IPR002885 | - | |
| Alju10g1908 | 587 | NCBIfam | pentatricopeptide repeat | 476 | 508 | IPR002885 | - | |
| Alju10g1908 | 587 | NCBIfam | pentatricopeptide repeat | 198 | 231 | IPR002885 | - | |
| Alju10g1908 | 587 | NCBIfam | pentatricopeptide repeat | 300 | 333 | IPR002885 | - | |
| Alju10g1908 | 587 | NCBIfam | pentatricopeptide repeat | 370 | 403 | IPR002885 | - | |
| Alju10g1908 | 587 | Gene3D | Tetratricopeptide repeat domain | 249 | 359 | IPR011990 | GO:0005515 | |
| Alju10g1908 | 587 | Gene3D | Tetratricopeptide repeat domain | 56 | 248 | IPR011990 | GO:0005515 | |
| Alju10g1908 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 230 | 264 | IPR002885 | - | |
| Alju10g1908 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 403 | 437 | IPR002885 | - | |
| Alju10g1908 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 265 | 295 | IPR002885 | - | |
| Alju10g1908 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 195 | 229 | IPR002885 | - | |
| Alju10g1908 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 508 | 542 | IPR002885 | - | |
| Alju10g1908 | 587 | Pfam | Pentacotripeptide-repeat region of PRORP | 137 | 293 | IPR033443 | - | |
| Alju10g1908 | 587 | Pfam | PPR repeat | 510 | 539 | IPR002885 | - | |
| Alju10g1908 | 587 | Pfam | PPR repeat | 476 | 505 | IPR002885 | - | |
| Alju10g1908 | 587 | Pfam | PPR repeat family | 297 | 345 | IPR002885 | - | |
| Alju10g1908 | 587 | Pfam | PPR repeat family | 367 | 416 | IPR002885 | - | |
| Alju10g1908 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 368 | 402 | IPR002885 | - | |
| Alju10g1908 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 160 | 194 | IPR002885 | - | |
| Alju10g1908 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 473 | 507 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju10g1908 | 120 | 552 | Glycosyltransferase | AT1G05670 | 31.954 | 4.95e-70 | 238 |