Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1907 ATGTTCTCTAAGATCGATTTGAGATCAGGTTATCATCAGCTTAGAGTTAGAGCTGAGGACATCCCTAAGACTGCTTTTCGAACTCGCTATGGGCACTATGAGTTTTTGGTTATGCCTTTCGGGTTGACCAATGCTCCGGCTAATGAGGAGGAGCATCGAGAACATCTTCATATTGCATTACGTATACTAAAAGACCATCAGTTGTATGCTAAGTTAAGTAAGTGTGAGTTTTGGCTCAGGGAAGTGAATTTCCTTGGCCATGTGGTGTCTGCTGAAGGGGTAGCTGTTGATCCAAGTAAAGTGGATGCCGTGTTGAAATGGGAACCTCCAAAGTCGGTGACTGAATTGCACCATTTCATCTTCTTCAAGCTTTTGGCCATACTCTGCAATATTCAAGTTAATATGGGTATGGCTGCAGAGACCCAGTTTCATGTTTTGGCCGTTGATGACAGTCTCATTGACAGAATGTTGATTGAGAGGCTCCTCAAAATCTCATCCTTCCAAGTTACAGCAGTGGATTCTGGAAGCAAGGCTTTGAAATTTCTTGGTTTAAATGAAGATGAACAGAGAAAAGCAGATAAAGTTGTTGACTCTAATAGTCATCAGGATTTAGAAGTGAACCTGATCATAACAGATTACTGTATGCCAGGAATGACAGGCTATGATCTACTGAGAAAAATCAAGGAATCTGAATCTCTCAAAAACATACCAGTGGTAATTATGTCCTCAGAGAATGTCCCAACAAGGATTAACAGATGCTTAGAAGAAGGAGCTCAAGAATTTTTTCTGAAACCCGTTCAACAGTCAGATGTAAACAAACTCAAGCCACATTTGATGAAATCAATGGTTAAGGAAGAGAAAGACCAATTCATCAATAACAAAACGAAGGACATGGAAGAAGAAACCCATAGATAA 915 0.4022 MFSKIDLRSGYHQLRVRAEDIPKTAFRTRYGHYEFLVMPFGLTNAPANEEEHREHLHIALRILKDHQLYAKLSKCEFWLREVNFLGHVVSAEGVAVDPSKVDAVLKWEPPKSVTELHHFIFFKLLAILCNIQVNMGMAAETQFHVLAVDDSLIDRMLIERLLKISSFQVTAVDSGSKALKFLGLNEDEQRKADKVVDSNSHQDLEVNLIITDYCMPGMTGYDLLRKIKESESLKNIPVVIMSSENVPTRINRCLEEGAQEFFLKPVQQSDVNKLKPHLMKSMVKEEKDQFINNKTKDMEEETHR 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1907 304 SMART REC_2 143 278 IPR001789 GO:0000160
Alju10g1907 304 CDD RT_LTR 1 89 - -
Alju10g1907 304 SUPERFAMILY CheY-like 142 272 IPR011006 -
Alju10g1907 304 CDD REC_typeA_ARR 145 274 - -
Alju10g1907 304 Gene3D - 48 89 IPR043128 -
Alju10g1907 304 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 12 44 - -
Alju10g1907 304 PANTHER TWO-COMPONENT RESPONSE REGULATOR 143 292 IPR045279 GO:0009736
Alju10g1907 304 ProSiteProfiles Response regulatory domain profile. 144 279 IPR001789 GO:0000160
Alju10g1907 304 FunFam Retrovirus-related Pol polyprotein from transposon 17.6-like Protein 12 44 - -
Alju10g1907 304 Gene3D - 1 47 IPR043128 -
Alju10g1907 304 Pfam Response regulator receiver domain 145 271 IPR001789 GO:0000160
Alju10g1907 304 SUPERFAMILY DNA/RNA polymerases 2 120 IPR043502 -
Alju10g1907 304 Gene3D - 138 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1907 Alju-ChrAlju10 36975322 36982305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1907 135 296 Response Regulator Gene Family AT3G57040 66.272 7.42e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Alju10g1907 Response_reg 3.5e-19 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju10g1907 10 36975322 36982305 Alju02g1204 02 9865254 9868066 CCT