Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1900 ATGCCGAAGAAGAAGCGAGGCGACAGTGATAGTGATGAAGAAGACATCTTCTATTACCGCTATGCTTCCTCTTCTGCACCTTCCTCAAACTCCATCAGAACCCTCAAGACTCACGGTGGCTCTGGTGGGTTAGCTCCCTCTAAATCCACTCTCTATGTCTCCAACCTCGACTTCTCCCTCACTAACTCTGACCTCAACACCCTCTTCTCCACCTTTGGGAAGATTGCACGAGTCACAGTTCTCAAGGACCGTGTCACTCGCCAGAGCCGTGGCGTTGCTTTCATCCAATACGTTTCTCGTGATGATGCACAAAAAGCCGCAGGTGAGATGAACCACAAAATCCTCAATGGTAGGACTTTGACTGCTTCCATTGCTGCTGATAATGGGCGAGCCCCAGAATTTATAAAGAAAAGGTTTTATAAGGATAAGAGTCGGTGTTATGAGTGTGGGGAAGGAGGCCATTTGTCTTATGAGTGTCCTAAGAATCAATTGGGGCCCAGGGACCGTCCAGTTCCCAAGCGTGAACGACGTGGTGTTGGGTACCGGCGGACCGAGGAGGATGATGACGGATCTGATGGTGGGGATCGGTTTGAGGATGATAATTGGGCTTCTATTGTGGATAATGGGGCGGATGAAAGGTTGTTAGCAGGTGATGAGAAGGTTGTGGAGAAGAAGAAGGCTAAGAAAGCAAGCTATTTCAGTGATGAGAGTGAAATGAAGATTTCTATACCCATTGAGCCAAATACTCAGTCTGCTTTTTTGGCTTTGCACTGTAATGTGGGTAGTTGTGATCCAGCACCCTGCAACTTTCAAATCAGCCTCAGAAGGAACTCAGATGAACTTATTCATTCTAGAGAAGGCTTACAATATAAGGAGGCTGTTGAGGCTGATTCAGAAGGTATGAGGGCTGATGCATCAACAGCTCCAATGGAGTTGGATGCCGTCGCTGTTCCAGCTGCGCAAGGTGGAACGCCAATGCCAGATGAACTGCAGAAGTAG 999 0.4805 MPKKKRGDSDSDEEDIFYYRYASSSAPSSNSIRTLKTHGGSGGLAPSKSTLYVSNLDFSLTNSDLNTLFSTFGKIARVTVLKDRVTRQSRGVAFIQYVSRDDAQKAAGEMNHKILNGRTLTASIAADNGRAPEFIKKRFYKDKSRCYECGEGGHLSYECPKNQLGPRDRPVPKRERRGVGYRRTEEDDDGSDGGDRFEDDNWASIVDNGADERLLAGDEKVVEKKKAKKASYFSDESEMKISIPIEPNTQSAFLALHCNVGSCDPAPCNFQISLRRNSDELIHSREGLQYKEAVEADSEGMRADASTAPMELDAVAVPAAQGGTPMPDELQK 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1900 332 SMART rrm1_1 50 123 IPR000504 GO:0003723
Alju10g1900 332 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 8 239 IPR044598 GO:0000398|GO:0005689
Alju10g1900 332 MobiDBLite consensus disorder prediction 167 201 - -
Alju10g1900 332 Pfam Zinc knuckle 145 161 IPR001878 GO:0003676|GO:0008270
Alju10g1900 332 Gene3D - 136 168 - -
Alju10g1900 332 Gene3D - 36 200 IPR012677 -
Alju10g1900 332 SMART c2hcfinal6 145 161 IPR001878 GO:0003676|GO:0008270
Alju10g1900 332 SUPERFAMILY Retrovirus zinc finger-like domains 130 162 IPR036875 GO:0003676|GO:0008270
Alju10g1900 332 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 1 133 - -
Alju10g1900 332 SUPERFAMILY RNA-binding domain, RBD 46 131 IPR035979 GO:0003676
Alju10g1900 332 SMART rrm2_1 50 123 IPR003954 GO:0003676
Alju10g1900 332 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Alju10g1900 332 MobiDBLite consensus disorder prediction 158 201 - -
Alju10g1900 332 CDD RRM_ZCRB1 48 123 IPR034219 -
Alju10g1900 332 ProSiteProfiles Zinc finger CCHC-type profile. 145 161 IPR001878 GO:0003676|GO:0008270
Alju10g1900 332 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 120 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1900 Alju-ChrAlju10 36898292 36901911 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1900 49 125 Eukaryotic Initiation Factors Gene Family AT4G34110 31.169 8.23e-07 48.9