Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1898 ATGTGTCCACCTGCTGAGGAGAAGATGGAAGATGGTAAGCAATTAGCTGCCTCAGCTAACAGCCCACTGGTCCATGGTGAAAATGGTGACCCTGCCGACTGTCGATTCTCTGAATTCTGCAAGAATGGGCTATCATTGGATGATGAAAGTTGCAGACAAGCAATGAAGCTGTTCACAGAAACCAAACACATTCTACAGACCAATGCATCATCTATTGGGAATGGAACGCATGAAGAAGCAGAACGGTATTGGTTTTCCTTTGTCTTATACTGCATCAAGAGATTGGCTCACAAGCTTACAGACAGTGAGAAGAAAGTGACTGATAGTAATGGACTTACCCTGTGCCAGATATTGAGAAAGGCAAAGTTAAACATTGTGGACTTTTTCAAAGAACTTCCTCAGTTTCTTGTTAAGGGTGGTCCAATTTTAAGTAATATATATGGCACAGATTGGGAAAGCAGGCTTGAGGCAAAGGAATTGCATGCAAACTTTCTTCACTTAAGCGTACTTAGCAAGTACTATAAACGTGCATTCGGGGAGTTCTTCTTGGCAAATGATGCCATCGAAAAAAATTCAGCTGTTCCCATGACTGGTGACTATGCATCTCAATATCATCGATTTGGATGGTTGGTTTTTCTGGCTCTTCGTGTCCATGCCTTCAGCCGTTTTAAAGACTTGGTGACTTGCACCAATGGCTTAGTTTCTATATTGGCTATCTTGATTATTCACATTCCTGCACGCTTCAGAAATTTTAACATTCATGACACATCACGCTTTGTTAAGAAAAGTAGCAAAGGTGTGGACATCATTGCATCACTTTGCAACATCTATGACAATTCAGAAGATGATGTGAGAAAAACTATGGAGAAAGCCAATAATTTAATTGCAGATATATCGAAGAAGAAGCCTTGTCTGGCATCTGAATGCGAAACTGCAACACTTGAGAATATTGACAAAGATGGTTTGTTCTACTTTAATGATCTTATGGAAGAATCATCTCTACCATCGTGTTTAAATATCTTGGAAAAAGATTATGAAGATGCCATTCGTAACCAAGGTGAGCTGGATGAGAGGCTGTTTATCAATGAGGAGGACAGCTTATTAGCTTCAGGAAGCTTGTCTGGAGGTTCAATGTCAGCAAGCGGTGTCAAGAGGAAATTTGATCAAATGGCGTCTCCTGCAAGGACAATTACAAGTCCACTCTCTCCCCAGAGCTCTCCTGCATCTCATCATGCAAATGGCATTCCAATTAGCGCAAATTCAAAGATGGCAGCCACTCCTGTAACCACGGCTATGACTACTGCTAAGTGGCTTCGTACTGTCATATGCCCACTTCCATCAAAGCCTTCCCCTGAGCTGGAGAAATTTCTGGCATCGTGTGATAGGGACGTCACAAGTGATGTAGTGCGCAGGGCACAGATTATATTGCAGGCTATATTTCCTAGCAGTCCTTTAGGAGAGCGGTGCTTAACTGGAAGCCTTCAAAGTGCAAACCTCATGGACAATGTTTGGGCTGAACAACGGAGACTGGAAGCCCTGAAGTTATATTATAGGGTCTTGGAGGCAATGTGCAGAGCAGAAGCCCAAGTACTGCATGCAATCAATTTAACCTCGTTGTTAACTAATGAGAGGTTCCATAGATGCATGCTTGCATGTTCTGCAGAATTGGTGCTGGCAACACACAAGACTGTAACAATGTTGTTTCCTGCAGTGCTGGAAAGGACTGGAATTACAGCTTTTGACCTTAGCAAGGTAATAGAAAGCTTCATAAGACATGAAGACTCTCTCCCAAGAGAATTGAGACGACATTTGAATTCATTGGAAGAACGGCTTTTGGAGAGTATGGTATGGGAAAAGGGTTCCTCCATGTATAATTCTTTGACAGTTGCAAGGCCTTCCCTCTCTTCAGAAATAACTCGTCTCGGATTGTTAGCTGAACCAATGCCATCATTAGATGCAATAGCAACGCATATTAACTTCTCTTGTGGGGGCCTGCCCCCTGGGTCTTCCTTACAGAAGCCTGAGACTATACCAAGTCAAAATGGGGATATTAGGTCACCAAAACGAATCTGCACAGAATATCGAAGTGTACTAGCAGAACGGAATTCGTTTACCTCACCAGTGAAGGATCGACTTCTTCCCTTCAGTAACCTTAAGTCAAAGCTCCCCCCTCCTTTGCAATCAGCTTTTGCGAGTCCAACAAGACCAAATCCAGGAGGTGGAGGGGAGACTTGCGCAGAAACAGGGATCAATATATTTTTTGGAAAGATTGTTAAGTTGGCAGCAGTCAGAATAGGTGGCATGGTTGAAAGGCTTCAATTGTCTCAACAGATAAGGGAGAACGTGTACTGCCTTTTTCAACAAATACTAAATCAAAGGACATCACTTTTCTTCAACCGCCATATTGATCAAATCATTCTATGTTGTTTCTATGGAATTGCAAAGATTTCTCAACTGAACTTAACTTTTAGGGAGATCATTTACAACTATAGGAAGCAACCACAATGCAAACCACAAGTCTTTCGTGGTGTATTTATTGACTGGTCATCAACACGCCGCAATGGGAGAACCGGACAGGAGCATGTTGATATCATCACATTTTACAATGAAATATTCATCCCCTCTGTAAAAGCTCTGCTGGTTGAGCTTGGTCCTGGTGGAACAACTACGAAAGCCAACCGGATACCTGAAGCCAGCAATAACAATGATGGCCATTTAGCTCAGTGTCCTGGGTCTCCTAAAATTTCTCCTTTTCCTAGCCTTCCTGACATGTCCCCTAAGAAAGTATCTGCATCACACAATGTATACGTGTCGCCATTGCGATCAGCCAAGATGGATGCTCTAATATCACATAGCTCAAAAAGCTATTATGCCTGTGTTGGGGAGAGCACTCATGCATACCAGAGCCCTTCCAAAGACCTGACCGCCATCAATAACCGTTTAAATGGCAATCGGAAGGTTCGAGGACCCCTCAACTTTGATGATGTTGATGTTGGCTTGGTCAGTGACTCCATGGTTGCAAACAGTCTGTATCTTCAGAACGGAAGTTGTGCGTCGTCATCGGGAGCAACGGTGAAGTCGGAGCAGCCGGACAGTTGA 3099 0.4321 MCPPAEEKMEDGKQLAASANSPLVHGENGDPADCRFSEFCKNGLSLDDESCRQAMKLFTETKHILQTNASSIGNGTHEEAERYWFSFVLYCIKRLAHKLTDSEKKVTDSNGLTLCQILRKAKLNIVDFFKELPQFLVKGGPILSNIYGTDWESRLEAKELHANFLHLSVLSKYYKRAFGEFFLANDAIEKNSAVPMTGDYASQYHRFGWLVFLALRVHAFSRFKDLVTCTNGLVSILAILIIHIPARFRNFNIHDTSRFVKKSSKGVDIIASLCNIYDNSEDDVRKTMEKANNLIADISKKKPCLASECETATLENIDKDGLFYFNDLMEESSLPSCLNILEKDYEDAIRNQGELDERLFINEEDSLLASGSLSGGSMSASGVKRKFDQMASPARTITSPLSPQSSPASHHANGIPISANSKMAATPVTTAMTTAKWLRTVICPLPSKPSPELEKFLASCDRDVTSDVVRRAQIILQAIFPSSPLGERCLTGSLQSANLMDNVWAEQRRLEALKLYYRVLEAMCRAEAQVLHAINLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPSLSSEITRLGLLAEPMPSLDAIATHINFSCGGLPPGSSLQKPETIPSQNGDIRSPKRICTEYRSVLAERNSFTSPVKDRLLPFSNLKSKLPPPLQSAFASPTRPNPGGGGETCAETGINIFFGKIVKLAAVRIGGMVERLQLSQQIRENVYCLFQQILNQRTSLFFNRHIDQIILCCFYGIAKISQLNLTFREIIYNYRKQPQCKPQVFRGVFIDWSSTRRNGRTGQEHVDIITFYNEIFIPSVKALLVELGPGGTTTKANRIPEASNNNDGHLAQCPGSPKISPFPSLPDMSPKKVSASHNVYVSPLRSAKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGATVKSEQPDS 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1898 1032 FunFam Retinoblastoma-related protein 1 429 617 - -
Alju10g1898 1032 Pfam Retinoblastoma-associated protein A domain 426 627 IPR002720 GO:0005634|GO:0051726
Alju10g1898 1032 Coils Coil 338 358 - -
Alju10g1898 1032 Gene3D - 204 362 - -
Alju10g1898 1032 SMART DUF3452_2 98 243 IPR024599 -
Alju10g1898 1032 FunFam Retinoblastoma-related protein 1 204 362 - -
Alju10g1898 1032 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 34 1030 IPR028309 GO:0006357|GO:0051726
Alju10g1898 1032 Pfam Domain of unknown function (DUF3452) 105 243 IPR024599 -
Alju10g1898 1032 Gene3D - 429 617 - -
Alju10g1898 1032 MobiDBLite consensus disorder prediction 396 415 - -
Alju10g1898 1032 CDD CYCLIN_AtRBR_like 750 881 - -
Alju10g1898 1032 FunFam Retinoblastoma-related protein 1 701 913 - -
Alju10g1898 1032 Pfam Retinoblastoma-associated protein B domain 750 877 IPR002719 GO:0005634|GO:0051726
Alju10g1898 1032 Coils Coil 277 297 - -
Alju10g1898 1032 Gene3D - 713 902 - -
Alju10g1898 1032 SMART RB_A_2 426 627 IPR002720 GO:0005634|GO:0051726
Alju10g1898 1032 SUPERFAMILY Cyclin-like 748 920 IPR036915 -
Alju10g1898 1032 SUPERFAMILY Cyclin-like 434 629 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1898 Alju-ChrAlju10 36824806 36831754 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1898 28 1032 Core Cell Cycle Gene Families AT3G12280 71.133 0.0 1419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Alju10g1898 RB_A 6.3e-64 CL0065