Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1896 ATGGAAGATGGTAAGCAATTAGCTGCCTCAGCTAACAGTCCACTGGTCCATGGTGAAAATGGTGACCCTGCTGACTGTCGATTCTCTGAATTCTGCAAGAATGGGCTATCATTGGATGATGAAAGTTGCAGACAAGCAATAAAGCTGTTCACAGAAACCAAACACCTTCTACAGACCAATGCATCATCTATCGGGAATGGAACGCATGAAGAAGCTGAACGGTATTGGTTTTCCTTTGTCTTATACTGCATCAAGAGATTGGCTGACAAGCATACAGACAGTGAGAAGAAAGTGACCGATAGTAATGGACTTACCCTGTGCCAGATATTGAGAAAGGCAAAGCTAAACATTGTGGATTTTTTCAAAGAACTTCCTCAGTTTCTTGTTAAGGGTGGTCCAATTTTAAGTAATATATATGGCACAGATTGGGAAAGCAGGCTTGAGGCAAAGGAGTCGCATGCCAACTTTCTTCACTTAATCATACTTAGCAAGTACTATAAACGTGCATTCGGGGAGTTCTTCTTGGAAAATGATGCCATCGAAAAAAATTCATCTGTTCCCATGACTGGTGACTATGCATCTCAATATCATCGATTTGGATGGTTGGTTTTTCTGGCTCTTCGTGTCCATGCCTTCAGCCGTTTTAAAGACTTGGTGACTTGCACTAATGGCTTAGTTTCTATATTGGCTATATTGATTATTCACATTCCTGCTCGCTTCAGAAATTTTAACATACATGACACATCGCGCTTTGTTAAGAAAAGTAGCAAAGGTGTGGACATCATTGCATCACTTTGCAACATCTATGACACTTCAGAAGATGATGTGAGAAAAACTATGGAGAAAGCCAATAATTTAATTGCAGATATATTGAAGAAGAAGCCTTGTCTGGCATCTGAATGCGAAACTGCAACACTTGAGAATATTGACAAAGATGGTTTGTTCTACTTTAATGATCTTATGGAAGAATCATCTCTACCATCGTGTTTAAATATCTTGGAAAAAGATTATGAAGATGCCATTCGTAACCAAGGTGAGCTGGATGAGAGGCTGTTTATCAATGAGGAGGACAGCTTATTAGCTTCAGGAAGCTTGTCTGGAGGTTCAATGTCAGCAAGCGGTGTCAAGAGGAAATTTGATCAAATGGCATCACCTGCGAAGACCATTACAAGTCCACTCTCTCCCCAAAGCTCTCCTGCATCTCATCATGCAAATGGCATTCCAATTAGTGCTAATTCAAAGATGTTAGCCACTCCTGTAACCACTGCTATGACTACTGCTAAGTGGCTTCGTACTGTCATATGCCCACTTCCATCAAAGCCTTCCCCTGAGCTGGAGAAATTTCTGGCATCATGTGATAGGGACGTCACAAGTGATGTAGTGCGCAGGGCACAGATTATATTGCAGGCTATATTTCCTAGCAGTCCTTTAGGAGAGCGGTGCTTAACTGGAAGCCTTCAAAGTGCAAACCTCATGGACAATGTTTGGGCTGAACAACGGAGACTGGAAGCCCTGAAGTTATATTATAGGGTCTTGGAGGCAATGTGCAGAGCAGAAGCCCAAGTACTGCATGCAATCAATTTAACCTCGTTGTTAACTAATGAGAGGTTCCATAGATGCATGCTTGCATGTTCTGCAGAATTGGTGCTGGCAACACATAAGACTGTAACAATGTTGTTTCCTGCAGTGCTGGAAAGGACTGGAATTACAGCTTTTGACCTTAGCAAGGTAATAGAAAGCTTCATAAGACATGAAGACTCTCTCCCAAGAGAATTGAGACGACATTTGAATTCATTGGAAGAACGGCTTTTGGAGAGTATGGTATGGGAAAAGGGTTCCTCCATGTATAATTCTTTGACAGTTGCAAGGCCTTCCCTCTCTTCGGAAATAAGTCGTCTCGGATTGTTAGCTGAACCAATGCCATCATTAGATGCAATTGCAACGCATATTAACTTCTCTTGTGGGGGGCTGCCCCCTGGGCCTTCCTTACAGAAGCCTGAGACTGTACCAAGTCAAAATGGGGATATTAGGTCACCAAAACGAATCTGCACAGAATATCGAAGTGTACTAGCAGAACGGAATTCGTTTACCTCACCAGTGAAGGATCGACTTCTTCCCTTCAGTAACCTTAAGTCAAAGCTCCCCCCTCCTTTGCAATCAGCTTTTGCGAGTCCAACAAGACCAAATCCAGGAGGTGGAGGGGAGACTTGTGCAGAAACAGGGATCAATATATTTTTTGGAAAGATTGTTAAGTTGGCAGCAGTCAGAATAGGTGGCATGGTTGAAAGGCTTCAATTGTCTCAACAGATAAGGGAGAACGTGTACTGCCTTTTTCAACAAATACTAAATCAAAGGACATCACTTTTCTTCAACCGCCATATTGATCAAATCATTCTCTGTTGTTTCTATGGAATTGCAAAGATTTCTCAACTGAACTTAACTTTTAGGGAGATCATTTACAACTATAGGAAGCAACCACAATGCAAACCACAAGTCTTTCGTGGTGTATTTATTGACTGGTCATCAACACGCCGCAATGGGAGAACCGGACAGGAGCATGTTGATATCATCACATTTTACAATGAAATATTCATCCCCTCTGTAAAAGCTCTGCTGGTTGAGCTTGGTCCTGGTGGAACAACTACGAAAGCCAACCGGATACCTGAAGCCAGCAATAACAATGATGGCCATTTAGCTCAGTGTCCTGGGTCTCCTAAAATTTCTCCTTTTCCTAGCCTTCCTGACATGTCCCCTAAGAAAGTATCTGCATCACACAATGTATACGTGTCGCCATTGCGATCAGCCAAGATGGATGCTCTAATATCACATAGCTCAAAAAGCTATTATGCCTGTGTTGGGGAGAGCACTCATGCATACCAGAGCCCTTCCAAAGACCTGACCGCCATCAATAACCGTTTAAATGGCAATCGGAAGGTTCGAGGACCCCTCAACTTTGATGATGTTGATGTTGGCTTGGTCAGTGACTCCATGGTTGCAAACAGTCTGTATCTTCAGAACGGAAGTTGTGCGTCGTCATCGGGAGCAACGGTGAAGTCGGAGCAGCTGGACAGTTGA 3075 0.4289 MEDGKQLAASANSPLVHGENGDPADCRFSEFCKNGLSLDDESCRQAIKLFTETKHLLQTNASSIGNGTHEEAERYWFSFVLYCIKRLADKHTDSEKKVTDSNGLTLCQILRKAKLNIVDFFKELPQFLVKGGPILSNIYGTDWESRLEAKESHANFLHLIILSKYYKRAFGEFFLENDAIEKNSSVPMTGDYASQYHRFGWLVFLALRVHAFSRFKDLVTCTNGLVSILAILIIHIPARFRNFNIHDTSRFVKKSSKGVDIIASLCNIYDTSEDDVRKTMEKANNLIADILKKKPCLASECETATLENIDKDGLFYFNDLMEESSLPSCLNILEKDYEDAIRNQGELDERLFINEEDSLLASGSLSGGSMSASGVKRKFDQMASPAKTITSPLSPQSSPASHHANGIPISANSKMLATPVTTAMTTAKWLRTVICPLPSKPSPELEKFLASCDRDVTSDVVRRAQIILQAIFPSSPLGERCLTGSLQSANLMDNVWAEQRRLEALKLYYRVLEAMCRAEAQVLHAINLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPSLSSEISRLGLLAEPMPSLDAIATHINFSCGGLPPGPSLQKPETVPSQNGDIRSPKRICTEYRSVLAERNSFTSPVKDRLLPFSNLKSKLPPPLQSAFASPTRPNPGGGGETCAETGINIFFGKIVKLAAVRIGGMVERLQLSQQIRENVYCLFQQILNQRTSLFFNRHIDQIILCCFYGIAKISQLNLTFREIIYNYRKQPQCKPQVFRGVFIDWSSTRRNGRTGQEHVDIITFYNEIFIPSVKALLVELGPGGTTTKANRIPEASNNNDGHLAQCPGSPKISPFPSLPDMSPKKVSASHNVYVSPLRSAKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGATVKSEQLDS 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1896 1024 Coils Coil 330 350 - -
Alju10g1896 1024 FunFam Retinoblastoma-related protein 1 693 905 - -
Alju10g1896 1024 FunFam Retinoblastoma-related protein 1 196 354 - -
Alju10g1896 1024 Pfam Retinoblastoma-associated protein A domain 418 619 IPR002720 GO:0005634|GO:0051726
Alju10g1896 1024 Pfam Retinoblastoma-associated protein B domain 742 869 IPR002719 GO:0005634|GO:0051726
Alju10g1896 1024 SMART RB_A_2 418 619 IPR002720 GO:0005634|GO:0051726
Alju10g1896 1024 CDD CYCLIN_AtRBR_like 742 873 - -
Alju10g1896 1024 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 26 1022 IPR028309 GO:0006357|GO:0051726
Alju10g1896 1024 FunFam Retinoblastoma-related protein 1 421 609 - -
Alju10g1896 1024 Pfam Domain of unknown function (DUF3452) 97 235 IPR024599 -
Alju10g1896 1024 Gene3D - 196 354 - -
Alju10g1896 1024 SUPERFAMILY Cyclin-like 740 912 IPR036915 -
Alju10g1896 1024 Gene3D - 421 609 - -
Alju10g1896 1024 Gene3D - 705 894 - -
Alju10g1896 1024 SMART DUF3452_2 93 235 IPR024599 -
Alju10g1896 1024 SUPERFAMILY Cyclin-like 426 621 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1896 Alju-ChrAlju10 36802729 36814694 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1896 20 1024 Core Cell Cycle Gene Families AT3G12280 70.640 0.0 1412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Alju10g1896 RB_A 6.2e-64 CL0065