Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1853 ATGCATGAGGCAGATTTTATTGACTTGATGGATCAGTATCAAGAAGGGAGACCTCTTGAGAAGCTCCATCAAGGATGCCTCAGTCACGCTTTTAAAGAGAGGCCATATGTGTGTTCTGTTGATGACTGCCAAGCAAGTTACCGAAGAAAGGATCACTTGACTCGCCACCTTCTGCAGCATAAAGGGAAAACTTTTAAATGTCCAATCAAGGATTGTAATCGTGACTTAGCTCTTAAAGGGGATATGACCAGGCATGTCAAAGAATTTCATAATGGGAATTCCTCTCCAGCTAAAGTGGAAACTCAGAAGCAGCATGAATGCCCAGAAATCGGCTGTGGAAAGGTCTTCAAATTTGCTTCACAGCTACAAAAGCATGAAAATTGTCATGTTAAGCTGGACACAGTAGAGGTAGTCTGCTTGGATCCTGGTTGCTTGAAGCATTTTACTAATGTCCAGTGCCTTAAAGCCCATGTCAAAACCTGTCATCAATTTGTGACCTGTGAGACTTGTGGGAAAAAGGAACTGAAGAAAAATATCAAGCGGCACCTCCGATCGCATGAAACTAGTTCTTCATCAGAGGCATTTGAATGTGAACACAAGGATTGTAGCAGGAAATTCACTACTAAATACAATCTTGAAAAGCACGTAAAGGCTGTACACTTCAAAGAGAAGCCATTTGTATGTGGCTTTCCTGATTGTGGCATGAGATTTTCCTACAAACATGTGAGGGACAATCATGAAAAAACTGGGTTACATGTTTATACACATGGGGATTTTGAAGAATCTGATGAACAATTCAGGTCAAGGCCAAGGGGAGGGTGCAAGAGAAAGTGTCCTACAGTTGAAATGTTAGTTAGGAAGAGGGTCACTCCTCCCAATCAATTGGAGCACATTTTGTTTGGAGAGGATACAGAGTAA 918 0.4172 MHEADFIDLMDQYQEGRPLEKLHQGCLSHAFKERPYVCSVDDCQASYRRKDHLTRHLLQHKGKTFKCPIKDCNRDLALKGDMTRHVKEFHNGNSSPAKVETQKQHECPEIGCGKVFKFASQLQKHENCHVKLDTVEVVCLDPGCLKHFTNVQCLKAHVKTCHQFVTCETCGKKELKKNIKRHLRSHETSSSSEAFECEHKDCSRKFTTKYNLEKHVKAVHFKEKPFVCGFPDCGMRFSYKHVRDNHEKTGLHVYTHGDFEESDEQFRSRPRGGCKRKCPTVEMLVRKRVTPPNQLEHILFGEDTE 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1853 305 SMART c2h2final6 65 90 IPR013087 -
Alju10g1853 305 SMART c2h2final6 105 129 IPR013087 -
Alju10g1853 305 SMART c2h2final6 137 162 IPR013087 -
Alju10g1853 305 SMART c2h2final6 165 186 IPR013087 -
Alju10g1853 305 SMART c2h2final6 195 220 IPR013087 -
Alju10g1853 305 SMART c2h2final6 36 60 IPR013087 -
Alju10g1853 305 SMART c2h2final6 226 252 IPR013087 -
Alju10g1853 305 Gene3D Classic Zinc Finger 223 249 - -
Alju10g1853 305 Gene3D Classic Zinc Finger 168 222 - -
Alju10g1853 305 PANTHER ZINC FINGER PROTEIN 21 295 - -
Alju10g1853 305 ProSitePatterns Zinc finger C2H2 type domain signature. 67 90 IPR013087 -
Alju10g1853 305 Pfam Zinc finger, C2H2 type 36 60 IPR013087 -
Alju10g1853 305 Pfam Zinc finger, C2H2 type 195 220 IPR013087 -
Alju10g1853 305 Pfam Zinc finger, C2H2 type 105 126 IPR013087 -
Alju10g1853 305 SUPERFAMILY beta-beta-alpha zinc fingers 178 230 IPR036236 -
Alju10g1853 305 SUPERFAMILY beta-beta-alpha zinc fingers 102 131 IPR036236 -
Alju10g1853 305 Gene3D Classic Zinc Finger 31 95 - -
Alju10g1853 305 ProSitePatterns Zinc finger C2H2 type domain signature. 197 220 IPR013087 -
Alju10g1853 305 Gene3D Classic Zinc Finger 96 164 - -
Alju10g1853 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 134 IPR013087 -
Alju10g1853 305 SUPERFAMILY beta-beta-alpha zinc fingers 31 62 IPR036236 -
Alju10g1853 305 ProSitePatterns Zinc finger C2H2 type domain signature. 228 252 IPR013087 -
Alju10g1853 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 195 225 IPR013087 -
Alju10g1853 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 65 IPR013087 -
Alju10g1853 305 ProSitePatterns Zinc finger C2H2 type domain signature. 107 129 IPR013087 -
Alju10g1853 305 ProSitePatterns Zinc finger C2H2 type domain signature. 139 162 IPR013087 -
Alju10g1853 305 ProSitePatterns Zinc finger C2H2 type domain signature. 38 60 IPR013087 -
Alju10g1853 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 95 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1853 Alju-ChrAlju10 35829448 35830851 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1853 33 255 C2H2 Transcription Factor Family AT1G72050 49.455 1.07e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju10g1853 zf-C2H2 0.00018 CL0361