Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1843 ATGCATAACAGATTGACACCTCATAAGGCTAAATCTGAGATAAAGATGGATGAACTGGGGGAACCTGGAGAGAGGCCTATATTCAGAGATATTAGACGCTATTACTGTGAATACTGTGGCATCTGTCGATCCAAAAAGACCTTGATAACCTCTCATATCAATTCTTGCCACAAGGAGGAGTTGGAAAGAATCAAAGTGGATAAAAATGATGAAGTCGGGGACACAAAATCCAATACTTGCAAGGAATGTGGTGCTAGTTTCAAAAAACCAGCATATTTAGTGCAGCACATGCAATGCCATTCTCTTGAGGAAAGATATTTATGCCATCAGAAATTTATGGATACTGTTGTTATCAAGAAGGGAGACCTCTTGAGAAGCTCCATCAAGGATGCCTCAGTCACGCTTTTTGAAGAGAGACCATATGTGTGTTCTATTGATGACTGCCAAGCAAGTTACCGAAGAAAGGATCACTTGACTCGCCACCTTCTGCAGCATAAAGGGAAAACTTTTAAATGTCCAATCAAGGATTGCAATCGTCACTTGGCTCTCAAAGGGAATATGACCAGGCATGTCAAAGAATTTCATAACGGGAGTTCCTCCCCAGCTAAAGTGGAAACTCAGAAGCAGCATGAATGCCCAGAAATCGGCTGTGGAAAGGTCTTCAAATTTGCTTCAAGGCTACAAAAGCATGAAAATTGTCATGTGAAGCTGGACACAGTAGAGGTAGTTTGCTTGGATCCTGGTTGCATGAAGCATTTTACTAATGTCCAGTGCCTTAAAGCCCATGTCAAAACCTGTCATCAATTTGTGACCTGTGAGACTTGTGGGAAAAATGAACTGAAGAAAAATATCAAGCGGCACCTCCGATCGCATGAAACTAGTTCTTCATCAGAGGCATTTGAATGTGAACACAAGGACTGTAGCAGCACATTCACTACTAAATACAATCTTGAAAAGCATGTAAAGGCCGTACACTTCAAAGAGAAGCCATTTGTATGTGGCTTTCCTGATTGTGGCATGAGATTTTCCTACAAACATGTGAGGGACAATCATGAAAAAACTGGGTTACACGTTTATACACATGGAGATTTTGAAGAATCTGATGAACAATTCAGGTCAAGGCCAAGGGGAGGGTGTAAGAGAAAATGTCCTACAGTTGAAATGTTAGTTAGGAAGAGGGTCACTCCTCCCAATCAATTGGAGCACATTTTGTTTGGAGAGGATACAGAGTAA 1233 0.4128 MHNRLTPHKAKSEIKMDELGEPGERPIFRDIRRYYCEYCGICRSKKTLITSHINSCHKEELERIKVDKNDEVGDTKSNTCKECGASFKKPAYLVQHMQCHSLEERYLCHQKFMDTVVIKKGDLLRSSIKDASVTLFEERPYVCSIDDCQASYRRKDHLTRHLLQHKGKTFKCPIKDCNRHLALKGNMTRHVKEFHNGSSSPAKVETQKQHECPEIGCGKVFKFASRLQKHENCHVKLDTVEVVCLDPGCMKHFTNVQCLKAHVKTCHQFVTCETCGKNELKKNIKRHLRSHETSSSSEAFECEHKDCSSTFTTKYNLEKHVKAVHFKEKPFVCGFPDCGMRFSYKHVRDNHEKTGLHVYTHGDFEESDEQFRSRPRGGCKRKCPTVEMLVRKRVTPPNQLEHILFGEDTE 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1843 410 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Alju10g1843 410 SMART c2h2final6 210 234 IPR013087 -
Alju10g1843 410 SMART c2h2final6 34 57 IPR013087 -
Alju10g1843 410 SMART c2h2final6 331 357 IPR013087 -
Alju10g1843 410 SMART c2h2final6 242 267 IPR013087 -
Alju10g1843 410 SMART c2h2final6 141 165 IPR013087 -
Alju10g1843 410 SMART c2h2final6 300 325 IPR013087 -
Alju10g1843 410 SMART c2h2final6 270 291 IPR013087 -
Alju10g1843 410 SMART c2h2final6 78 100 IPR013087 -
Alju10g1843 410 SMART c2h2final6 170 195 IPR013087 -
Alju10g1843 410 ProSitePatterns Zinc finger C2H2 type domain signature. 143 165 IPR013087 -
Alju10g1843 410 Gene3D Classic Zinc Finger 30 123 - -
Alju10g1843 410 ProSiteProfiles Zinc finger C2H2 type domain profile. 170 200 IPR013087 -
Alju10g1843 410 ProSitePatterns Zinc finger C2H2 type domain signature. 333 357 IPR013087 -
Alju10g1843 410 ProSitePatterns Zinc finger C2H2 type domain signature. 244 267 IPR013087 -
Alju10g1843 410 ProSitePatterns Zinc finger C2H2 type domain signature. 212 234 IPR013087 -
Alju10g1843 410 Gene3D Classic Zinc Finger 273 327 - -
Alju10g1843 410 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 170 IPR013087 -
Alju10g1843 410 SUPERFAMILY beta-beta-alpha zinc fingers 283 335 IPR036236 -
Alju10g1843 410 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Alju10g1843 410 PANTHER ZINC FINGER PROTEIN 19 400 - -
Alju10g1843 410 Pfam Zinc finger, C2H2 type 300 325 IPR013087 -
Alju10g1843 410 Pfam Zinc finger, C2H2 type 141 165 IPR013087 -
Alju10g1843 410 Pfam Zinc finger, C2H2 type 79 98 IPR013087 -
Alju10g1843 410 ProSitePatterns Zinc finger C2H2 type domain signature. 302 325 IPR013087 -
Alju10g1843 410 SUPERFAMILY beta-beta-alpha zinc fingers 133 167 IPR036236 -
Alju10g1843 410 Gene3D Classic Zinc Finger 125 198 - -
Alju10g1843 410 Gene3D Classic Zinc Finger 199 269 - -
Alju10g1843 410 ProSitePatterns Zinc finger C2H2 type domain signature. 172 195 IPR013087 -
Alju10g1843 410 SUPERFAMILY beta-beta-alpha zinc fingers 75 110 IPR036236 -
Alju10g1843 410 ProSiteProfiles Zinc finger C2H2 type domain profile. 210 239 IPR013087 -
Alju10g1843 410 ProSiteProfiles Zinc finger C2H2 type domain profile. 300 330 IPR013087 -
Alju10g1843 410 Gene3D Classic Zinc Finger 328 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1843 Alju-ChrAlju10 35597576 35600398 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1843 138 360 C2H2 Transcription Factor Family AT1G72050 49.818 3.50e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju10g1843 zf-C2H2 0.0026 CL0361