Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1822 ATGGCTTCATCTTTCTTGAGAAAACATGGAAAGAAGCCTTCATTCTTTAAGGTTTTAATTGAGGATTTCACCACTCGCTTGAAAATCCCACCAGCTTTTATCAAAGAATTTGGGAAAGAAGTGCCAGAGAAAACAATACTTGAGACTTATTTCGGTAAATCGGAGGGAGTTGAAGTTGAAAAACTTGGGAACAAATTTTATTTTCACAATGGATGGAAAAAGTTCGTGGAGGATAATAGTTTGGAAACTGGTGATTTCTTGGTGTTCAAATATTTTGAAGATTATTCAAAGTTTAAGGTCAAAATCTACGGGAAAACTTGCTGTGAGAAGAAGCAATACGATGTGATTTGTGGTAAAAAAGATAAAAGAAATGTAAAAGAAGGAAGAAAAAGAAAGAGAGATGAAGAAGAAGATAATGGAAATAAAGATGGAGAATGCAAATCAAAAGCTTTTGAAAGCAATATAATTAGTATTGATTCTGAATCTGATGATGAAGAAAATGATGAACTTGAAACTAGGATGAATAGAAGACGCAGTACATTGCCTTCAAATTACTGTAACCAAATACAACTCCCTTTAAATCCTTCCTTTCAACTTGAGCTCAAGCATTCAACTGCCAATTTTTATATATATATACCCAAAGATTTTCTCAGAGAACACATGAAGGATATACTAAACAAAAGGATCAACTTTCAAATATCCCAAGAAATTCGGAATGTGGAGATACTAGTGCTCAAACGTGGACTTAATACAAAAGAAGTGAGAGTTACTGGAGAATGGAAGAAAATAGCGAAAGAATATGGTTTAAAAGTAGGAGATGTTTGCATCTTTGAAATGATCAAAAGTGATAATGATTTTGACGACTCTTATGTGTTTCGTATTCATGTTTATAGTTGGGACCCCAAGAAGGAAGAGTTTGCTAAGAAATATTAG 933 0.3323 MASSFLRKHGKKPSFFKVLIEDFTTRLKIPPAFIKEFGKEVPEKTILETYFGKSEGVEVEKLGNKFYFHNGWKKFVEDNSLETGDFLVFKYFEDYSKFKVKIYGKTCCEKKQYDVICGKKDKRNVKEGRKRKRDEEEDNGNKDGECKSKAFESNIISIDSESDDEENDELETRMNRRRSTLPSNYCNQIQLPLNPSFQLELKHSTANFYIYIPKDFLREHMKDILNKRINFQISQEIRNVEILVLKRGLNTKEVRVTGEWKKIAKEYGLKVGDVCIFEMIKSDNDFDDSYVFRIHVYSWDPKKEEFAKKY 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1822 310 SUPERFAMILY DNA-binding pseudobarrel domain 194 297 IPR015300 -
Alju10g1822 310 CDD B3_DNA 195 286 IPR003340 GO:0003677
Alju10g1822 310 MobiDBLite consensus disorder prediction 126 147 - -
Alju10g1822 310 Pfam B3 DNA binding domain 202 286 IPR003340 GO:0003677
Alju10g1822 310 Pfam B3 DNA binding domain 15 103 IPR003340 GO:0003677
Alju10g1822 310 ProSiteProfiles B3 DNA-binding domain profile. 12 106 IPR003340 GO:0003677
Alju10g1822 310 PANTHER B3 DOMAIN-CONTAINING 9 283 - -
Alju10g1822 310 SMART B3_2 197 298 IPR003340 GO:0003677
Alju10g1822 310 SMART B3_2 15 106 IPR003340 GO:0003677
Alju10g1822 310 Gene3D - 7 108 IPR015300 -
Alju10g1822 310 SUPERFAMILY DNA-binding pseudobarrel domain 10 111 IPR015300 -
Alju10g1822 310 Gene3D - 173 299 IPR015300 -
Alju10g1822 310 CDD B3_DNA 13 103 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1822 Alju-ChrAlju10 34775340 34777939 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1822 28 111 B3 DNA Binding Superfamily AT3G18960 40.476 1.85e-15 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju10g1822 B3 1e-07 CL0405