Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1711 ATGGACGACGACTATTGGTGCAGTGATGACGAATACCATTACTCCGATCAGAATTCCGATGAGGTCTTTGAAGTTGACGACGGCGCCGGCATCGATTCAGTCATGGCTGATTATAAGCGTTCTACAACGCAGGTGATCTCAAGAAAATCACTCGTCGCTGCGCAGAAAGAAGATCTGCGGCAAGTAATGGAGATGCTTTCACTGAGAGAGCACCACGCTCGTACTCTTCTTATTCATCATCGTTGGGATGTGGAGAAGCTTTTCACAGTATATGTAGAAAAGGGAAAAGCCGCCTTGTTCGCAGATGCCGGTGTTACTGTATATACCGGTTCAGACCCATTGTCATCGGTTCAATCTTTTTCTTCATCTAGGGTTTTTTGTGAAATCTGCATAGAGAATATTCCAAGCCATGAAGTAACAAGAATGGAGTGCGGCCACTATTTCTGCAACGAATGTTGGACATCTCATTTTATCGTCCAGATCAACGAAGGCAAAAGTAAGCGCATCACTTGTATGGCTCATAAATGCAACGCAATTTGCGATGAAAATGTTGTGAGAGATCTTGTTCGTAAAGAGCAACCGGAGATGGCTGAGAAATTTGACCGGTTTCTTCTTGAATCCTACATTGAAGACAACAAGAGAGCCAAGTGGTGCCCTAGCGTTCCTCACTGTGGCAATGCAATTGGTGTTGAGGAAGAAGAATTATGTGAGGTTGAATGTTGCTGCGGCTTACAATTTTGCTTTAATTGCTCGTCAGAGGCTCATTCACCGTGTTCTTGTAGGATGTTTGAGCTATGGGCAAACAAGTGTAGAGATGAATCAGAAACTGTGAACTGGATCACTGCCCACACCAAGCCTTGCCCTAAATGCCACAAACCGGTGGAGAAGAACGGTGGCTGCAACTTGGTTACCTGTATCTGTCGCCAAGCATTTTGTTGGATCTGCGGCGAAGCCACCGGGCGAAATCATACGTGGTCAACCATAACAGGCCATAGCTGTGGCCGTTACCAGCCACGAGAGAAACTCGCAGAACTTGCCAAGAAAAATCTGTATCGTTACATGCATTATCATAACCGATACAAAGCTCACATGGACTCTTTGAAGCTTGAAGGTATGTTGAAAGAGACAATGCAACAGAAGGTTTCTGTTTCAGAGGAGAAGTATGATTCTAGTATCAGAGATTACAGCTGGGTCAATAAAGGGCTCTCGAGACTCTTCAGATCGAGGCGGGTGCTTTGTTATACGTATCCATTTGCGTATTATATGTTTGGAGGTGAGTTCTTTAATGAGGATATGATGCTAGAAAAGGAAAGAGAAAGGAAACAGAATTTGTTTGAGGATCAGCAGCAGCAACTGGAGGCGAATGTCGAGAGACTCTCAATGTTTCTTGAGGAACGGTTTGATGAGTTTGAAGATGATAAAGTGATGAAAATTAGGGATCAAGTCGTTAACCTATCCGCGGTTGTTGATAGTTCGTGCAGTAAAATGTATGAAGTCATTGAGAATGACTTGTTGGGTTCTCTTCATCATAGGATTGCTCCTTACAAATCAAAGGGCATAGAGAGGGCATCTCTTCTTAATTCATAA 1587 0.4379 MDDDYWCSDDEYHYSDQNSDEVFEVDDGAGIDSVMADYKRSTTQVISRKSLVAAQKEDLRQVMEMLSLREHHARTLLIHHRWDVEKLFTVYVEKGKAALFADAGVTVYTGSDPLSSVQSFSSSRVFCEICIENIPSHEVTRMECGHYFCNECWTSHFIVQINEGKSKRITCMAHKCNAICDENVVRDLVRKEQPEMAEKFDRFLLESYIEDNKRAKWCPSVPHCGNAIGVEEEELCEVECCCGLQFCFNCSSEAHSPCSCRMFELWANKCRDESETVNWITAHTKPCPKCHKPVEKNGGCNLVTCICRQAFCWICGEATGRNHTWSTITGHSCGRYQPREKLAELAKKNLYRYMHYHNRYKAHMDSLKLEGMLKETMQQKVSVSEEKYDSSIRDYSWVNKGLSRLFRSRRVLCYTYPFAYYMFGGEFFNEDMMLEKERERKQNLFEDQQQQLEANVERLSMFLEERFDEFEDDKVMKIRDQVVNLSAVVDSSCSKMYEVIENDLLGSLHHRIAPYKSKGIERASLLNS 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1711 528 CDD Rcat_RBR_ARI1-like 281 334 - -
Alju10g1711 528 ProSiteProfiles TRIAD supradomain profile. 123 337 IPR044066 -
Alju10g1711 528 ProSiteProfiles Zinc finger RING-type profile. 127 175 IPR001841 -
Alju10g1711 528 FunFam RBR-type E3 ubiquitin transferase 256 505 - -
Alju10g1711 528 Pfam IBR domain, a half RING-finger domain 275 319 IPR002867 GO:0008270
Alju10g1711 528 Pfam IBR domain, a half RING-finger domain 198 260 IPR002867 GO:0008270
Alju10g1711 528 SUPERFAMILY RING/U-box 122 210 - -
Alju10g1711 528 FunFam RBR-type E3 ubiquitin transferase 121 212 - -
Alju10g1711 528 Gene3D - 256 505 - -
Alju10g1711 528 SUPERFAMILY RING/U-box 279 322 - -
Alju10g1711 528 CDD RING-HC_RBR_TRIAD1 125 178 - -
Alju10g1711 528 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 50 406 IPR031127 GO:0004842|GO:0016567
Alju10g1711 528 SMART ibrneu5 268 333 IPR002867 GO:0008270
Alju10g1711 528 SMART ibrneu5 198 260 IPR002867 GO:0008270
Alju10g1711 528 Pfam Ariadne domain 339 526 IPR045840 -
Alju10g1711 528 SUPERFAMILY RING/U-box 198 266 - -
Alju10g1711 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 213 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1711 Alju-ChrAlju10 26621081 26622667 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1711 63 524 ARIADNE family AT2G16090 70.386 0.0 680