Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1701 ATGGCTTCCCTCTTCCCCTGTCCCACTCTCTCTTCTAAAATTGACTTCGTGGTTTCTCCATTATCAGAAGCACGGACTCATTACCCTAAATTTAATGGCAGTAGTTCTTTGGCCGCTCAAAATTTCGGCACCTGCAGACTCTGTGCTTTAAGAAATTCTAATTCTCCAAGCTTTGTTCCTATGGCTTCCGCCAGCAGAGAGCCCATGGTTCCCCCTTACCGCGTTTTGATAACTGGTTCAAGCAAAGGAATAGGTTATGCATTGGCAAAAGAGTTTCTAAAAGCTGGTGACTATGTCATAATTTGCTCAAGATCAAATGAAAAGGTAGAATCAACTGTCCAGAGCTTGAGAGAAGAATTTGGGGAGCAGTATGTGTGGGGCACTAAGTGTGATGTGAGAGAGGCAGAGGATGTGAAGAATTTAGTTTCATTTGCCCAAGAAAAACTGAAATACATTGATATATGGATAAATAATGCAGGATCAAATGCATATAGCTACAAGCCTCTTGCGGAGGCGTCTGATGAAGATCTTATCGAGGTAGTTGCTACAAATACACTTGGTTTGATGATATGTTGTCGAGAGGCAATAAAGATGATGGCAAATCAGCCACGTGGAGGTCATATTTTCAATATTGATGGGGCAGGTTCAGATGGAAGACCAACTCCCAGGTTTGCTGCCTATGGAGCTACGAAGCGGAGTGTGGTGCATCTAACAAAATCATTACAGGCAGAACTACAGATGCAGGACGTTAAAAATGTGGTGGTACATAATCTTTCCCCAGGGATGGTAACCACTGATCTTCTCATGTCTGGTGCTACAACTAAACAGGCCAAGTTTTTCATTAATGTATTGGCTGAACCAGCTGAAGTGGTTGCTGAATTCCTGGTTCCAAACATTAGATCTACCATTGCCAATGGATCAATGAAGCCAACATATATTAAATTCCTCACTGGGGTTAAAGCGTATTCTCAGATATTTTCACGACTTGCATTTGGGGCAAGAAGGAACCGTTACATCCTTGAGGATTGA 1029 0.4247 MASLFPCPTLSSKIDFVVSPLSEARTHYPKFNGSSSLAAQNFGTCRLCALRNSNSPSFVPMASASREPMVPPYRVLITGSSKGIGYALAKEFLKAGDYVIICSRSNEKVESTVQSLREEFGEQYVWGTKCDVREAEDVKNLVSFAQEKLKYIDIWINNAGSNAYSYKPLAEASDEDLIEVVATNTLGLMICCREAIKMMANQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMQDVKNVVVHNLSPGMVTTDLLMSGATTKQAKFFINVLAEPAEVVAEFLVPNIRSTIANGSMKPTYIKFLTGVKAYSQIFSRLAFGARRNRYILED 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1701 342 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN-RELATED 59 339 - -
Alju10g1701 342 CDD SDR_c 75 296 - -
Alju10g1701 342 FunFam Chlorophyll(Ide) b reductase NOL, chloroplastic 70 315 - -
Alju10g1701 342 Pfam short chain dehydrogenase 75 270 IPR002347 -
Alju10g1701 342 Gene3D - 73 311 - -
Alju10g1701 342 PRINTS Glucose/ribitol dehydrogenase family signature 74 91 IPR002347 -
Alju10g1701 342 PRINTS Glucose/ribitol dehydrogenase family signature 150 161 IPR002347 -
Alju10g1701 342 PRINTS Glucose/ribitol dehydrogenase family signature 200 216 IPR002347 -
Alju10g1701 342 PRINTS Glucose/ribitol dehydrogenase family signature 227 246 IPR002347 -
Alju10g1701 342 PRINTS Glucose/ribitol dehydrogenase family signature 251 268 IPR002347 -
Alju10g1701 342 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 214 242 IPR020904 GO:0016491
Alju10g1701 342 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 214 IPR002347 -
Alju10g1701 342 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 161 IPR002347 -
Alju10g1701 342 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 227 246 IPR002347 -
Alju10g1701 342 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 74 292 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1701 Alju-ChrAlju10 25665782 25678596 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1701 41 267 Acyl Lipid Metabolism Gene Families AT1G24360 30.544 3.55e-18 82.0