LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju10g1670	ATGGAGGGCAAATTAGGATTAGTTGCAGGCTCTCGCAACTGCAACGAGTTCATCATCTTCAACCCAGATGTCAATTTTTCTAGAAGAGAAGAGGAAGAAGAAAGAGGGAAAGAATGCAAAATATGTGGGGATGAGATAGGAATAAACAAAGAGGGAGAGGTGTTTGTGGCGTGCAATGAGTGCGCCTTCCCAGTTTGTAGCAACTGTTATGAGTATGAGAGACGAGAAGGCAGCCATGTCTGTCCTCAGTGCAAAACCAGATATAAACGTCTCAAGGGGAGCGCTAGAGTTGAGGGAGATGAGGAGGAGGATGACATTGATGACTTGGAGAATGAGTTCGATTTTAATGGAGAAACAAAACAACAGGATATGCAGCTCCATGCTTGTTCCCAGGAAGAGAATGATGAAAGGGTGGGAGAAGGGCATAATAATAATGCAATAGGGCCATTGAGCATGGGCAATAAGGTAATTTCAGTACAAGCAAGACCTATGGATCCTTCCAAGGACTTGGCTGCCTATGGCTATGGAAGTGTTGCTTGGAAGGAGAGAATGCAGATTTGGAGGCAAAGACAAGAAAAAAAGCGTCCCATGAGAATTGACAATAGTAGCACTTTTGAAGAAAACCAAGATAGTTTTGCAGATGATGATGGCACTGATTTTCCTCAAATGGACAAGGCAAGACAAGCATTGTCGAGAAAGATGGCAATTCCGTCAAGCAAAATAAATCCTTACAGAATAATGATAATAATTCGAATGGTGATTCTTGGATTCTTCTTCCATTATAGAGTGACACATCCTGTGGACAATGCTTTTGCTCTCTGGCTTGTTGCTGTTATATGTGAGCTTTGGTTTGCTCTTTCATGGATTCTTGATCAGTTCCCTAAGTGGTTCCCTGTTCAAAGAGAAACCTATCTAGATAGACTCTCCTTAAGGTATGAGAAAGATGGGGAGGCTTCACAACTTTGTGGAATTGATATATTTGTGACAACATTGGACCCATTGAAGGAACCTCCATTGGTGACTGCAAACACAATTCTTTCAATTCTTGCGGTGGACTACCCACCTGAGAAGGTCTCATGCTATGTCTCTGATGACGGCGCCGCCATGTTAACATTTGAAACCTTATCTGAAACTTCTGAATTTGCAAGGAAATGGGTCCCATTTTGTAAGAAATTCAATATTGAGCCTCGTGCTCCTGAGTGGTATTTTGCTGAGAAGGTAAATTACTTGAAAGATAAGGCGCACCCTTCGTTTGTTAAAGAGAGAAGAGCTATGAAGAGAGAGTACGAAGAGTTTAGAGTTCGAATTAATTGTTTGGTTGCAAAGGCTAGAAAGGTGCCCGAAGAAGGATGGACAATGCAGGATGGAACAATATGGCCTGGAAATAATCTCGATGACCACCCTGGGATGATCCAGGTTTTTCTTGGACAATATGGAGGACATGACACAGATGGAAATGAATTGCCACACTTGGTATATGTTTCTAGGGAAAAGAGACCTAAATTCAAACACCATAAGAAAGCAGGAGCATTGAATGCATTGGTTAGAGTTTCAGCTGTGCTTTCAAATGCTCCTTATTTGTTAAACTTGGACTATGATCATTACATCAACAATAGCAGAGCTATCAAGGAAGCAATGTGCTTCATGATGGACCCATTACAAGGAAAAAGGGTATGTTATGTTCAGTTTTCTCACAGATTTGATGGAGCTGATAATAATGACAAATATAACAGTCCAAGTGCATCATTCCTTGATATTAACATGAAAGGCTTGGATGGGATTCAAGGACCTATATATGTTGGGACAGGATGTGTTTTTAACAGGCATACACTATATGGTTATGATGCTCCCAGAAAAAAGAAGACACCAACTAAGACTTGCAATTGTTGGCCAAAGTGGTGTTGTTGTTTGTGTTGTTGCTTAAGAAACAAGAAGAAAAAGTCGAAGAATTCGAGGTTTGACTTTAAAGATAGCAGTAGCACAAAAGTGCATGATGCAAAGATATCAATGAAAGACTATGCTTTGACTTGTATTGAGCAGGGAACCAAGGGAGTTGGAGGGCAAGTTTTGGGTGAAACATATGAGACAAAGTTGTGGAAGAAATTTGGACAATCTCCTGTACTTGTTGCATCTACTCTTCTAGAGAATGGTGAGCCAGTAAAAGATGCTAGCCTTGCATCTCTACTTAAGGAAGCCATCCATGTCATTAGCTGTAGCTACGAGGAGAAGACCGAATGGGGAAAAGAGGTTGGATGGATATATGGTTCAACTACAGAGGATATACTAACAGGGTTTAAAATGCATTGCCATGGATGGAGATCAATACATTGTATACCTGAAAGGTCTGCATTCCAAGTTTCTACACCAAGGAACCTTTCAGATGGTTTGGTTCAAGTGTTTAAGTGGGCATTAGGATCCACTGAGATATTCTTGAGCAAACATTGCCCTATTTGGTATGGCTATAGAGGAGGTTTGAAGTGGCTAGAACGTCTTTCTTATATAAATGCTACTGTTTATCCATGGACATCTATTCCTCTTGTTGCTTATTGCACTCTTCCTGCTGTTTGTTTACTCACCGGCAAATTTATTGTTCCTCAGCTCAATAACTTTGATGGCATGTGGTTTCTTTCACTATTAATATGCATATTTGCCACAAGCATACTAGAGATGAGATGGAGTGGAGTTACAATTGGTGAGTGGTGGAGAAATGAGCAATTCTGGGTGATAGGAGGAGTATCAGCAAATTTATTTGCACTATTTTTAGGACTCTTCAAAGTCATAGCTGGTATACACACAAAGTTCATTGTGAAATCAAAAGCAAGTTATGAAGAAGAAGACAAGGACTTCTCTGGCCTATTTGCGCTGAACTGGACTACTTTGCTCATTATACCAACCACTTTGTTAATTCTAAACCTTATTGCCATTGTTGCCGGTGTGTCACAGGAAATTAATGTTGGCTTTGAATCTTGGGGTCCTTTACTGGGGAAACTATTATTTTCCTCTTGGGTGATTTGTCATTTATACCCTTTCCTTAAGGGTATGATGGGTAGGCAAAATAGGACTCCCACCATTGTTCTTGTTTGGTCTATTTTGCTTGCTTCTTTCTTTTCTGTTTTGTGGGTCAAGATTGACCCTTTCTTGCCCAAATCCAGTGGCCCAATTTTGGAGGAGTGTGGATTGGATTGTGATTAG	3192	0.406	MEGKLGLVAGSRNCNEFIIFNPDVNFSRREEEEERGKECKICGDEIGINKEGEVFVACNECAFPVCSNCYEYERREGSHVCPQCKTRYKRLKGSARVEGDEEEDDIDDLENEFDFNGETKQQDMQLHACSQEENDERVGEGHNNNAIGPLSMGNKVISVQARPMDPSKDLAAYGYGSVAWKERMQIWRQRQEKKRPMRIDNSSTFEENQDSFADDDGTDFPQMDKARQALSRKMAIPSSKINPYRIMIIIRMVILGFFFHYRVTHPVDNAFALWLVAVICELWFALSWILDQFPKWFPVQRETYLDRLSLRYEKDGEASQLCGIDIFVTTLDPLKEPPLVTANTILSILAVDYPPEKVSCYVSDDGAAMLTFETLSETSEFARKWVPFCKKFNIEPRAPEWYFAEKVNYLKDKAHPSFVKERRAMKREYEEFRVRINCLVAKARKVPEEGWTMQDGTIWPGNNLDDHPGMIQVFLGQYGGHDTDGNELPHLVYVSREKRPKFKHHKKAGALNALVRVSAVLSNAPYLLNLDYDHYINNSRAIKEAMCFMMDPLQGKRVCYVQFSHRFDGADNNDKYNSPSASFLDINMKGLDGIQGPIYVGTGCVFNRHTLYGYDAPRKKKTPTKTCNCWPKWCCCLCCCLRNKKKKSKNSRFDFKDSSSTKVHDAKISMKDYALTCIEQGTKGVGGQVLGETYETKLWKKFGQSPVLVASTLLENGEPVKDASLASLLKEAIHVISCSYEEKTEWGKEVGWIYGSTTEDILTGFKMHCHGWRSIHCIPERSAFQVSTPRNLSDGLVQVFKWALGSTEIFLSKHCPIWYGYRGGLKWLERLSYINATVYPWTSIPLVAYCTLPAVCLLTGKFIVPQLNNFDGMWFLSLLICIFATSILEMRWSGVTIGEWWRNEQFWVIGGVSANLFALFLGLFKVIAGIHTKFIVKSKASYEEEDKDFSGLFALNWTTLLIIPTTLLILNLIAIVAGVSQEINVGFESWGPLLGKLLFSSWVICHLYPFLKGMMGRQNRTPTIVLVWSILLASFFSVLWVKIDPFLPKSSGPILEECGLDCD	1063

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju10g1670	1063	Pfam	Cellulose synthase	324	1054	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Alju10g1670	1063	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	335	873	IPR029044	-
	Alju10g1670	1063	SUPERFAMILY	RING/U-box	31	111	-	-
	Alju10g1670	1063	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	479	619	IPR029044	-
	Alju10g1670	1063	CDD	mRING-HC-C4C4_CesA	39	87	-	-
	Alju10g1670	1063	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	23	112	IPR013083	-
	Alju10g1670	1063	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	228	1029	-	-
	Alju10g1670	1063	Coils	Coil	92	112	-	-
	Alju10g1670	1063	Pfam	Zinc-binding RING-finger	34	105	IPR027934	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju10g1670	Alju-ChrAlju10	24301535	24312953	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju10g1670	7	1062	Glycosyltransferase	AT5G09870	61.638	0.0	1382