Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju10g1593 | ATGCTGGTTCAATTAGCATTGGACCAAGCCCAAACCATGCATAAGGAAGCTCAAGAATATGGCTCAAAATGTGTGACCAAGATGCAGAAATGTGTGTTCAGTGACTGTTTAAAGCTCTACGATAATGCCATCTTCCATCTAAACCGAACCCTTCATGGCCTACACACAATTTCTTGCTCACTATCAGATGCGCAAACATGGCTCAGCACTTCGCTTACAAACATCGAAACTTGCCGGAGCGTCGCATTGCAGATCGGTGTCAGAGAGTTTACATCTCAAAATAATGTGAGCTACAACGTTAGAAAGATGATAAGCAATGTGTTGGCAGTTTATGGGAAATTCCTGAAGCAAGAGAACTACACAGAAGAAGAGACAAAAGCTCATGAGTTTCCAAGTTGGTTTTCTCGGCATGACCGGAGGTTGTTGAGCTCGAGGCGATCGTCGGTGAAGGCAAATCTTGTGGTGGCTCAAGATGGGACGGGGAATTTTAAGACGGTGCAAGCCGCCATTGATGTAGCATCAAGGAGAAAAGTGAAGACGAGGTTTGTGATAAAAGTGAAGAAAGGGATTTATGAAGAGAATATTGAAGTTGATAAGGATAATGAAAATCTCATGATTATTGGTGATGGAACTAGAGTCACCATTATAACTGGTAGTAAAAGTGTCAAAGATGGAATTACCCCAGCTAGCTCCGCAACAGCAGGTTAG | 708 | 0.4294 | MLVQLALDQAQTMHKEAQEYGSKCVTKMQKCVFSDCLKLYDNAIFHLNRTLHGLHTISCSLSDAQTWLSTSLTNIETCRSVALQIGVREFTSQNNVSYNVRKMISNVLAVYGKFLKQENYTEEETKAHEFPSWFSRHDRRLLSSRRSSVKANLVVAQDGTGNFKTVQAAIDVASRRKVKTRFVIKVKKGIYEENIEVDKDNENLMIIGDGTRVTIITGSKSVKDGITPASSATAG | 235 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju10g1593 | 235 | NCBIfam | pectinesterase inhibitor domain | 3 | 111 | IPR006501 | GO:0004857 | |
| Alju10g1593 | 235 | Gene3D | - | 110 | 234 | IPR012334 | - | |
| Alju10g1593 | 235 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 2 | 115 | IPR035513 | - | |
| Alju10g1593 | 235 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 1 | 109 | IPR035513 | - | |
| Alju10g1593 | 235 | SMART | PMEI_2 | 1 | 110 | IPR006501 | GO:0004857 | |
| Alju10g1593 | 235 | CDD | PMEI-like_3 | 1 | 116 | - | - | |
| Alju10g1593 | 235 | SUPERFAMILY | Pectin lyase-like | 148 | 233 | IPR011050 | - | |
| Alju10g1593 | 235 | PANTHER | PECTINESTERASE | 6 | 233 | - | - | |
| Alju10g1593 | 235 | Pfam | Plant invertase/pectin methylesterase inhibitor | 2 | 109 | IPR006501 | GO:0004857 | |
| Alju10g1593 | 235 | Pfam | Pectinesterase | 152 | 233 | IPR000070 | GO:0030599|GO:0042545 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju10g1593 | Alju-ChrAlju10 | 20821981 | 20822688 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju10g1593 | 1 | 235 | Carbohydrate Esterase | AT3G47400 | 47.303 | 2.99e-71 | 226 |