Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1584 ATGAACAAGCCGCGGTCTCCATCTGTCGTCTTATATAAGATATCTGAATGCTCACGGCTTCCTTCCCTTCCAACGCCAAACACAAACCCTAACCCTAGCTGTGCGATTCTATCCATGGACGCTCTTGAATCGAACCCTAATCCTCCTCCCTTTCTTCCGTCCGATCATAACCCTGCTCCTCCGCCACCGGAAAGCTTTCCATCGGATCTCCAGAAGCCATATGAGCAAACTTCGAATTTCGATTATCAAAATTCTTTGATAACCCTAGCTTCGGATGGCCAAAACGTTAACGGTCAACCCCAGTCTGCTAATGGGAACGGCCACGTGAACGGACTGGATAACTGTCAGGGCGGCGCCGATAGCAATAGCAATTCGAAGCCTTTGAGTGCGAGGCCTTTGATTTCTGAAAACGCCGGTACCAACAATACCCAGAGTGGCACTGACAAGGATCACTCTGGTGGGGAAGAGGAAACTACAAGCAAACGTCGCCGCCGTAGTCGCTGGGACCCGCAACCTGATTCCAATGATCAGAGTGGTGGTGAAGCCGGTGGCGGGACGAAGAAGAGGAAGTCACGTTGGGCTGATGATGAGCCGAAGCCGGTGATTCAGCTTCCCGATTTCATGGGCGGTATCGAGTTTGATCCTGAAATTCAAGCTTTGAATAGTAGGCTTCTTGAGATTAGTCGGATGCTGCAATCAGGTCTGCCTCTTGATGATCGCCCTGAAGGTGCTAGATCTCCCTCACCTGAACCTATATATGATAACATGGGAATTAGAATTAACACTAGAGAGTATCGTGCCCGTGAAAGATTGCAAAAGGAGAGGCAAGAAATCATTTCTCAGATTATCAAGAAAAACCCTGCATTCAAGCCACCCGCTGATTATAGGCCACCGAAACTTCAGAAGAAGCTGTATATACCAATGAAAGAATATCCCGGTTACAACTTTATAGGGCTTATTATTGGTCCTCGAGGCAATACACAGAAGCGGATGGAAAGAGAAACTGGTGCTAAAATTGTGATTCGGGGTAAAGGGTCTGTAAAAGAGGGTAGACTGCAACAGAAGAGGGATTTGAAACCTGACCCTTCAGAGAATGAAGATTTGCATGTCCTAGTGGAGGCAGAAACACAAGAATCACTTGAAGCTGCCGCGGGTATGGTGGAGAAGCTCTTGCAGCCTGTGGATGAGGTCTTGAATGAGCATAAGAGGCAACAACTTAGGGAACTTGCAGCCTTGAATGGTACAATTAGGGATGAAGAATATTGCAGGCTGTGTGGTGAACCTGGCCATCGCCAATATGCATGTCCTACCCGCACTTCTACATTTAAGAGTGAAGTGGTCTGTAAGCACTGTGGGGATGGTGGTCACCCCAGCATAGATTGTCCGGTGAAGGGAGCCACTGGCAAGAAGATGGATGACGAGTATCAGAACTTCTTGGCAGAGCTGGGAGGGACAGTTCCTGAATCAGCAATAAAGCAGAACCCCACGTTGGCAATTGGTTCAGGCAATTCTGGAAACAATCCTCCTTGGGCAAACAATTCTGGATCGAGTGGTGGTACTTCACAACCTGGTTTAGGGGCTAATCCGATTAAAAAGGAAATTGATGATACAAATTTGTATATTGGGTATTTACCGCCCACTCTTGATGATGATGCTCTGATCCAATTGTTTCAACAATTTGGTGAGATTGTTATGGCAAAGGTTATAAAAGACCGGATGACTGGTTTGAGTAAAGGATATGGGTTTGTCAAGTATGCTGATGTCCAAATGGCGAATAATGCAATTATGGCCATGAATGGCTATCGCCTTGAGGGCAGAACCATTGCAGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTACTGTGCCTCCTGGCCCTCCAGCATCAGCCATGCCCACATATCCTATTTCAAGCCAGCCAGTTGGTGCCTATCCATCTCAACAATATGCTGCTGGTGGTCCTCTTGGTGCTGGCCCCCCTGGAAGTTATGCCGGCGCCCCAGTCCCATGGGGACCTCCTGTCCCTCCACCGTATGCTACTTATGCTCCTCCCCCTCCTGGATCAACTATGTACCCTCCGATTCAAGGTCAATCTATACCTCCATATGGTGTTCAGTATCCTCCAGTCCAGACAGCCCCTCCAGGTGCCCCATCCCAGCCTGTAACTTCTAGTGAATCCCAGCAGAGTTTTCCTCCAGGAGTGCAGTCTGACAATAGCACCTCTACTCAATCTACGACGGTCAATATTTACGGGAGTTCAATGCCTTCTATGCCGCCAGCTGCTCAACCTACATATGCCACATCTTATGGTTATCCGCCTTACTATGGTGCAGTTCCCCCTCCACCTCCCCCACCTGCCCCTGCTCCTATCTCCACTTCAGATCATATGCCTTGGGCTACCAACCCTTCAGTGCCACCCCCGGCATCAACTGCAGAGAAGACAACATACAGTGCAGATCAATCTCAGAGCATAGGAAATGTGCCTTGGGCAACAAATCCTCCAATGCCCCCACCCCCTACAACTGCAGAGAAGACAACATATGGTGCAGATTCAGAGTATGAGAAGTTCATGGCAGAGATGAAATGA 2583 0.4874 MNKPRSPSVVLYKISECSRLPSLPTPNTNPNPSCAILSMDALESNPNPPPFLPSDHNPAPPPPESFPSDLQKPYEQTSNFDYQNSLITLASDGQNVNGQPQSANGNGHVNGLDNCQGGADSNSNSKPLSARPLISENAGTNNTQSGTDKDHSGGEEETTSKRRRRSRWDPQPDSNDQSGGEAGGGTKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESAIKQNPTLAIGSGNSGNNPPWANNSGSSGGTSQPGLGANPIKKEIDDTNLYIGYLPPTLDDDALIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADVQMANNAIMAMNGYRLEGRTIAVRVAGKPPQPTVPPGPPASAMPTYPISSQPVGAYPSQQYAAGGPLGAGPPGSYAGAPVPWGPPVPPPYATYAPPPPGSTMYPPIQGQSIPPYGVQYPPVQTAPPGAPSQPVTSSESQQSFPPGVQSDNSTSTQSTTVNIYGSSMPSMPPAAQPTYATSYGYPPYYGAVPPPPPPPAPAPISTSDHMPWATNPSVPPPASTAEKTTYSADQSQSIGNVPWATNPPMPPPPTTAEKTTYGADSEYEKFMAEMK 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1584 860 Gene3D - 214 291 IPR047086 -
Alju10g1584 860 Pfam KH domain 315 387 IPR004088 GO:0003723
Alju10g1584 860 MobiDBLite consensus disorder prediction 234 255 - -
Alju10g1584 860 FunFam splicing factor-like protein 1 292 420 - -
Alju10g1584 860 MobiDBLite consensus disorder prediction 616 635 - -
Alju10g1584 860 Gene3D - 421 473 - -
Alju10g1584 860 Pfam Splicing factor 1 helix-hairpin domain 189 296 IPR032570 -
Alju10g1584 860 SUPERFAMILY Retrovirus zinc finger-like domains 418 464 IPR036875 GO:0003676|GO:0008270
Alju10g1584 860 PANTHER RNA-BINDING PROTEIN RELATED 153 653 IPR045071 -
Alju10g1584 860 MobiDBLite consensus disorder prediction 70 148 - -
Alju10g1584 860 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 537 615 IPR000504 GO:0003723
Alju10g1584 860 SMART rrm1_1 538 611 IPR000504 GO:0003723
Alju10g1584 860 MobiDBLite consensus disorder prediction 793 828 - -
Alju10g1584 860 MobiDBLite consensus disorder prediction 715 746 - -
Alju10g1584 860 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 539 608 IPR000504 GO:0003723
Alju10g1584 860 SMART kh_6 300 392 IPR004087 GO:0003676
Alju10g1584 860 MobiDBLite consensus disorder prediction 183 199 - -
Alju10g1584 860 ProSiteProfiles Zinc finger CCHC-type profile. 422 436 IPR001878 GO:0003676|GO:0008270
Alju10g1584 860 FunFam splicing factor-like protein 1 517 619 - -
Alju10g1584 860 FunFam splicing factor 1 420 473 - -
Alju10g1584 860 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 300 426 IPR036612 GO:0003723
Alju10g1584 860 MobiDBLite consensus disorder prediction 616 632 - -
Alju10g1584 860 MobiDBLite consensus disorder prediction 46 68 - -
Alju10g1584 860 MobiDBLite consensus disorder prediction 20 40 - -
Alju10g1584 860 SMART c2hcfinal6 447 463 IPR001878 GO:0003676|GO:0008270
Alju10g1584 860 SMART c2hcfinal6 421 437 IPR001878 GO:0003676|GO:0008270
Alju10g1584 860 SUPERFAMILY RNA-binding domain, RBD 533 627 IPR035979 GO:0003676
Alju10g1584 860 MobiDBLite consensus disorder prediction 784 848 - -
Alju10g1584 860 MobiDBLite consensus disorder prediction 19 203 - -
Alju10g1584 860 MobiDBLite consensus disorder prediction 149 171 - -
Alju10g1584 860 MobiDBLite consensus disorder prediction 345 366 - -
Alju10g1584 860 CDD KH-I_BBP 299 392 - -
Alju10g1584 860 MobiDBLite consensus disorder prediction 495 529 - -
Alju10g1584 860 MobiDBLite consensus disorder prediction 495 524 - -
Alju10g1584 860 Gene3D - 510 620 IPR012677 -
Alju10g1584 860 ProSiteProfiles Type-1 KH domain profile. 315 387 - -
Alju10g1584 860 Gene3D K Homology domain, type 1 292 420 IPR036612 GO:0003723
Alju10g1584 860 MobiDBLite consensus disorder prediction 688 746 - -
Alju10g1584 860 ProSiteProfiles Zinc finger CCHC-type profile. 448 462 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1584 Alju-ChrAlju10 20681479 20684453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1584 537 743 Eukaryotic Initiation Factors Gene Family AT3G16380 26.577 5.17e-13 70.5