Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1576 ATGGCTGATTCACGGGTTCCTTCTGGGCAAAGCCCTCACTTTCACCACCCAACAGCTGGCATCATCAAGAGGGTTCGATTGGAGAACTTCATGTGCCATAGCAACCTTGAGATTGAACTCGGAGAGTGGGTTAATTTCATTACTGGTCAAAATGGAAGTGGTAAGAGCGCAATCCTAACTGCATTGTGTGTTGCATTTGGATGTCGAGCAAGAGGGACTCAGAGAGCGGCGACTCTGAAGGATTTTATTAAAACTGGCTGCAGTTCTGCTGTCATCCACGTGGAAATAAAAAATGAAGGAGAGGATGCTTTTAAGCCCCAAATATATGGTGATATGATCACTGTAGAACGTAGGATATCTGAATCCACAAGCTCCGTGGTGTTAAAGGACTACAGAGGAAAGAAGGTGGTCAGCCGGAAAGCAGAACTCCAGGAAATGGTTGAGCATTTTAATATTGATGTAGAGAATCCATGTGTAGTTATGAGTCAAGACAAAAGCAGGGAATTTTTGCATTCAGGGAATGACAAGGATAAATTTAAGTTCTTTTACAAGGCTACGCTTCTTCAGCAAGTTGATGATCTTTTGGAAAGTGTTTCTAAAGGACTGGAGCATTCATTTGGACTTCTTGGAGGATTAGAGGCTACAATAAGGCCTGTAGAGAAGGAGCTTAACGAGTTAAGGGTTAAAATTACAAACATGGAACAAGTTGAACAAATATCATTGCAGATTCAGCAGTTAAAGAAAAAACTTGCGTGGTCATGGGTTTATGATGTGGACAAACAAATCCAGGGACAATGTTCAAAGATTGATAAATTAAAGGATCGAATACCAAAGTGCCAATCCAAAATTGATGACCAAATGAATATGGTTGAAGAATTGAGGGCATGTTTACATAAGAAGAAAGGTCATATCAAAAACTTGTTTGAAAAGACATCTGAGGTGAAGCACAAGAAGCAAAATTTACAACAATCTATATCTATGGCTGCAAAACAACTTCTTGAAAAAGAACAAGAGTGCAAACGCATAGCTGCCAGTATAGAGAAGATGGTAAGGCGTGTTAGGACTCTGGAAGAACAGGTGCAGGATATTTATGAGAAGCATGCACAAAGTACTCAGGCTGAAGAATCTGAGATAGAGGAGAAACTGAAGGTGCTCCAAAATGACGTTGATGCTGCTGAATCATCTTTGACAAGGTTGAGGGAAGAGGAAGCTATACTAGCTGACAATGTACAAAGACAAAGTAATGAAATAAGAAAGATTGCTGATGAGATTGAAGGACATGATAGACGGTATCGTGAAATCAACATTTCCATCCGTGAGCTTAAACAACACCAAACCAATAAGGTTACAGCATTTGGAGGAGATAGAGTGATGAACCTACTGCGTATTATTGAGAGAAGCTATCGGAGCTTTAAGAGGCCACCCATTGGTCCAATTGGCGCCCATCTGAACCTGGTTAATGGCGATAGGTGGGGTGTTGCTATTGAGCATGCAATTGGGAAGATGCTGAATGCTTTTATAGTGACTGATCACAAAGATTCTCTTCTTTTGAGAGAATGTGCAAAGGAAGCAAACTATGGTCACCTCCAAATTTTCATTTATGATTTTTCAAGACCACGATTGTCTTTACCAGCACACATGCTTCCCCAGACAACACATCCTTCGATTCTTTCTGTTTTATATTCGGCAAATGACACTGTGATCAATGTCTTAGTGGATCTGGGGAGCATTGAGAGACAAATTCTTGTTAGGGATTATGATACTGGTAAAATGGTTGCATTTGACGAAAGGATTTCAAATCTGAAGGAGGTCTTCACCTCAGATGGATATAAAATGTTTTCACGGGGCTCAGTGCAGACAGTTCTTCCCCCAAATAAGAGGCAGAGAACTAGCCGACTATGTAGTTCTTTTGATAATCAAATTAATGTTCTTGAAGCTGATGCTTCCCACGAGCAAGAAGCAGCTAATCGTTTAAAGAGAAGTAAAAGGGAGGCTGAAGAAAAGCTTGAGGATCTTAATGGGAGGCTAAGACATGTGAAGAGGGTATGTTCAAATGCAGAGAAGGATCTGTCTTCTAAGAAATTAGCATTCGAAGATGAGAAGAACCAGTATGTGATGGCAAATCGTTCATCACCTGCATCATCTGTGGATGAGATTCAACAAGAAATTTCTGAAGCCCAGCACGAAATAGAAAGGAAGACTGGCTTGTTGAAAGAATGTCAGAACAGGATGAATGAAGCAGCAGCAAAGACAGATCATCTTAAAATATCATTTGAAGAACTATGTGCATCAACACAAGAGGAGATTAGTGCCCTTGAGAGAGAAGAGAATGAACTGATACAGATTGAACGGGACATACGTTTAGCAGAAGAGGAGAAGGCTCATTATGATGGGATAATGCAACGCAAGGTACTCCCAGATATCAAGGAGGCAGAGGCACGCTATCTAGAGCTCAAGCAGCAACGAGAGGAATACAGCAGAAAGGCTTCTATAATTTGTTGTGAGGATGAACTTCGGTCTTTAGGAGATTGCAGTGGAAGTACCCCAGAGCAACTCAGCGCACAGATAGAAAGACTATCTCAGAGACTCAAGCGTGAGAGTCAAAGATACACAGAATCACTAGATGATCTTAGGATGCTGTGTGAGAAAAAAGAACGCAAGATTATGAGAAAGCAGCAAGCTTACAAAGCCTATCGAACAAAGTTAAATGCTTGTCAGAGAGCCTTAGAACTACGGAGGAACAAGTTCCGCAGAAATGCAACTTATTTGAGGCGTTTGTTGTCTTGGAAATTTAATGCCCATTTGGGAAGAAAAGGATTCAGTGGACTTATCACAGTCAATTATGAAGAAAAAACCCTTTCAATCAAGGTGCAAATGCCTCAAGATGCATCAGGATGTGCTGTTCGTGACACTCGAGGCCTTTCAGGTGGCGAGCGTTCGTTTTCAACATTATGCTTTACACTAGCCCTTCATGATATGACAGAATCCCCTTTCCGCGCAATGGATGAATTTGATGTTTTTATGGATGCTGTCAGTCGAAAGATCAGCTTGGACACTCTCGTGGACTTTGCTGTGGAGCAAGGATCCCAGTGGATATTTATTACCCCACATGATGTTAGTATGGTTAAGCAGGGAAACAGGATAAAGAAGCAGCAAATAGCAGCTCCCCGTTCTTGA 3177 0.4133 MADSRVPSGQSPHFHHPTAGIIKRVRLENFMCHSNLEIELGEWVNFITGQNGSGKSAILTALCVAFGCRARGTQRAATLKDFIKTGCSSAVIHVEIKNEGEDAFKPQIYGDMITVERRISESTSSVVLKDYRGKKVVSRKAELQEMVEHFNIDVENPCVVMSQDKSREFLHSGNDKDKFKFFYKATLLQQVDDLLESVSKGLEHSFGLLGGLEATIRPVEKELNELRVKITNMEQVEQISLQIQQLKKKLAWSWVYDVDKQIQGQCSKIDKLKDRIPKCQSKIDDQMNMVEELRACLHKKKGHIKNLFEKTSEVKHKKQNLQQSISMAAKQLLEKEQECKRIAASIEKMVRRVRTLEEQVQDIYEKHAQSTQAEESEIEEKLKVLQNDVDAAESSLTRLREEEAILADNVQRQSNEIRKIADEIEGHDRRYREINISIRELKQHQTNKVTAFGGDRVMNLLRIIERSYRSFKRPPIGPIGAHLNLVNGDRWGVAIEHAIGKMLNAFIVTDHKDSLLLRECAKEANYGHLQIFIYDFSRPRLSLPAHMLPQTTHPSILSVLYSANDTVINVLVDLGSIERQILVRDYDTGKMVAFDERISNLKEVFTSDGYKMFSRGSVQTVLPPNKRQRTSRLCSSFDNQINVLEADASHEQEAANRLKRSKREAEEKLEDLNGRLRHVKRVCSNAEKDLSSKKLAFEDEKNQYVMANRSSPASSVDEIQQEISEAQHEIERKTGLLKECQNRMNEAAAKTDHLKISFEELCASTQEEISALEREENELIQIERDIRLAEEEKAHYDGIMQRKVLPDIKEAEARYLELKQQREEYSRKASIICCEDELRSLGDCSGSTPEQLSAQIERLSQRLKRESQRYTESLDDLRMLCEKKERKIMRKQQAYKAYRTKLNACQRALELRRNKFRRNATYLRRLLSWKFNAHLGRKGFSGLITVNYEEKTLSIKVQMPQDASGCAVRDTRGLSGGERSFSTLCFTLALHDMTESPFRAMDEFDVFMDAVSRKISLDTLVDFAVEQGSQWIFITPHDVSMVKQGNRIKKQQIAAPRS 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1576 1058 SUPERFAMILY Methyl-accepting chemotaxis protein (MCP) signaling domain 277 445 - -
Alju10g1576 1058 Coils Coil 641 689 - -
Alju10g1576 1058 SUPERFAMILY Smc hinge domain 431 611 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Alju10g1576 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 1045 IPR027417 -
Alju10g1576 1058 Coils Coil 716 750 - -
Alju10g1576 1058 Coils Coil 808 828 - -
Alju10g1576 1058 Gene3D - 823 1053 IPR027417 -
Alju10g1576 1058 Coils Coil 856 901 - -
Alju10g1576 1058 Gene3D - 22 273 IPR027417 -
Alju10g1576 1058 Coils Coil 755 792 - -
Alju10g1576 1058 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 16 1057 - -
Alju10g1576 1058 Coils Coil 368 430 - -
Alju10g1576 1058 Pfam RecF/RecN/SMC N terminal domain 22 1048 IPR003395 -
Alju10g1576 1058 Coils Coil 318 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1576 Alju-ChrAlju10 20547243 20569879 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1576 19 1058 Structural Maintenance of Chromosomes family AT5G61460 60.865 0.0 1249