Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1525 ATGGGGAGGGGGAAGATAGAGATAAAGAGGATAGAGAACACAACGAACAGACAGGTGACATTCTGCAAAAGAAGGAATGGGCTTTTGAAGAAAGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTTCCCTCATCGTCTTCTCCAATCGTGGTCGTCTCTATGAGTACTCCAACAACAACATAAGGTCAACTATTGAGAGGTATAAAAAGGCATGTTCAGACCGTTCAATTACCCCCTCTACTACTGAAATCAATGCCCAGTATTATCAACAAGAATCTGCAAAGCTGCGACAACAGATTCAAATGCTGCAAAGTTCTAACAGGCACTTGATGGGTGATGCCTTAAGCACTCTGAATGTGAAGGAGCTCAAGCAGCTTGAGAATAGACTTGAACGAGGACTTTCTCGAATCAGGTCCAAAAAGGAGCTTGAACTTGAAAATGAAAACCTTTGTATTCGGACTAAGATAGCACAAGTGGAGAGAGCAGAAGAAGAAGAGATGGTATCAGGAAGAGGACAAGAGCTGAGTGCCCTTCAGGCTTTGGCTTCTCGAAATTACTTCATTCATACTACTTCATCACCTGGTGACAACAAGAATCTTCGTCTTGGGTAG 615 0.4309 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSNRGRLYEYSNNNIRSTIERYKKACSDRSITPSTTEINAQYYQQESAKLRQQIQMLQSSNRHLMGDALSTLNVKELKQLENRLERGLSRIRSKKELELENENLCIRTKIAQVERAEEEEMVSGRGQELSALQALASRNYFIHTTSSPGDNKNLRLG 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1525 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju10g1525 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju10g1525 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju10g1525 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju10g1525 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju10g1525 204 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Alju10g1525 204 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Alju10g1525 204 Coils Coil 121 144 - -
Alju10g1525 204 ProSiteProfiles K-box domain profile. 87 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju10g1525 204 Gene3D - 14 76 IPR036879 GO:0003677|GO:0046983
Alju10g1525 204 Pfam K-box region 85 162 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju10g1525 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju10g1525 204 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Alju10g1525 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 161 - -
Alju10g1525 204 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1525 Alju-ChrAlju10 18477860 18490295 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1525 1 191 MADS-box Gene Family AT4G09960 70.244 5.98e-101 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju10g1525 K-box 3.8e-19 No_clan