Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1500 ATGGCTTCCGTTGCAGCCACACAGGTTCTACTACACAACGCCCCCTCACGAAATCACCGATCAACCAGATTCTCTTCACTCCAAAGCGCCACTTCCAGATCTCTACTTGTTCGAATTCGAGCCTCGCAGACTTCGGAGGAGCCTCGCAAGAGCCAGAAAGCACCCCCTGGAGTTGACACCAGAATCCATTGGGACAACGAAGATGAGGGCTGGATCGGAGGCACTACTAGTAATAGTAAACAATCCAAACCAGAGGATGTGCTCGGTCAAAAATTTGCTGATTTCCTTTCTGATTTTTCTGGCTCTCATTACGAATTTTTAGGAGTTTCAGCTGAAGCTGATTTAGAAGAGATTAAAGCAGCTTACAGGAGATTATCAAAGGAATACCACCCAGACACAACCTCACTCCCTCTAAAAACTGCCTCAGACAAATTCATGAAGTTGAGAGAAGTGTACAATGTCCTGAGCAATGAAGAGAGAAGAAGATTTTATGACTGGACGCTTCTCCAGGAGGCAGCGAGCCGGCAATCGGAGAAGATGAAGATGAGATTGGAGGATCCTCACGAGTTAGATATGAAGAACTGGGAATCTGTTCCAGACATGGTTGATCGGCTTGGAGGAAGGAACCTGAAGCTCAGTGATCAAGCAGTCACTGCTCTCACTGTTGATGTTTTCATCATTATTTTTGCTATTTGCTGCATCATTTATGTAATATACTTCAAAGAACCATATTACTAG 738 0.4485 MASVAATQVLLHNAPSRNHRSTRFSSLQSATSRSLLVRIRASQTSEEPRKSQKAPPGVDTRIHWDNEDEGWIGGTTSNSKQSKPEDVLGQKFADFLSDFSGSHYEFLGVSAEADLEEIKAAYRRLSKEYHPDTTSLPLKTASDKFMKLREVYNVLSNEERRRFYDWTLLQEAASRQSEKMKMRLEDPHELDMKNWESVPDMVDRLGGRNLKLSDQAVTALTVDVFIIIFAICCIIYVIYFKEPYY 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1500 245 Pfam DnaJ domain 103 165 IPR001623 -
Alju10g1500 245 SUPERFAMILY Chaperone J-domain 102 170 IPR036869 -
Alju10g1500 245 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC 1 244 IPR044618 -
Alju10g1500 245 ProSiteProfiles dnaJ domain profile. 102 168 IPR001623 -
Alju10g1500 245 MobiDBLite consensus disorder prediction 43 68 - -
Alju10g1500 245 SMART dnaj_3 101 160 IPR001623 -
Alju10g1500 245 Coils Coil 108 128 - -
Alju10g1500 245 ProSitePatterns Nt-dnaJ domain signature. 145 164 IPR018253 -
Alju10g1500 245 MobiDBLite consensus disorder prediction 41 84 - -
Alju10g1500 245 FunFam DnaJ homolog subfamily C member 4 91 189 - -
Alju10g1500 245 Gene3D DnaJ domain 95 188 IPR036869 -
Alju10g1500 245 PRINTS DnaJ domain signature 122 137 IPR001623 -
Alju10g1500 245 PRINTS DnaJ domain signature 104 122 IPR001623 -
Alju10g1500 245 PRINTS DnaJ domain signature 140 160 IPR001623 -
Alju10g1500 245 CDD DnaJ 103 157 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1500 Alju-ChrAlju10 17937594 17940109 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1500 103 165 C2H2 Transcription Factor Family AT1G74250 40.299 3.98e-08 51.6