Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1378 ATGTACACAAGAAGGCTTCAAAGGTTGGAGTCTGTGGTCACATCTATGGATATGAAGAGTTCAAATAAAACAAGAGCTGCTAAAGTTTCTGGAAGAGAAAAAAAAGAAACAACAGGAAAAGAAGATGTATTGAGCAAACTGAGGAAAGTAGATTTGGCAGATCAAGAATGGGTCAATAAGATTCCAGAGTGTCCTGTTTTCTGCCCATCAGAGCAGGAGTTTGAGGATCCTTTAGTATATCTGCAGAAGATTGCTTCTGAGGCACAAAAATATGGAATGTGCAAAATTGTTTCTCCTCTAAATGCCTCTATTCCAGCTGGTGTTGTCTTAATGAAAGAGAGAGGGAATTTCAAGTTTGAAACCATTGTACAACCTCTTGGGTATTCTGAATTGAACGAGGACAAGGAAACAGTCTATTCTCTCAGAGGCAGAAAATACACTTATCGTGATTTCGAGACTTTGGCGAACAAGGCATTTCTTAGCCGGTTTTACAGTTCAGGAAGTCTTCCGTCTTCATATCTGGAAAAATTATTCTGGCATGAGATGGAACATGGAGAGATGGGAACTGTTGAGTATGGAGTCAATGTTGAAGGTAGTGCTTTTTCATGTGATCCTCATGACAAGCTTGGAAAAAGCAAGTGGAATTTGAAGAATTTCTCGCGGCTGCAGAAATCTACATTGCAGTTCATTGACAGAGAGATTCCTGGAATAACTGACCCTATGCTTTATATTGGAATGCTATTCAGCATGTTTGCATGGCATGTAGAAGATCACTATTTGTACAGCATTAATTATCATCACTCGGGAGCAAACAAAACTTGGTACGGCGTTCCCAGCCATGCAGCCTCTCGATTTGAAGAGGTCGCCTTAGATCATGTGTTCCACAAGAACATTTTATCAAAGCACAGTGGAGAGGCCAGTGCCTACGAAACTCTTGCTCATAAAACAACCATGTTTTCACCAAATGTCCTGCTCCAACATGGTGTTCCAGTTTACAAGGCTGTGCAGAAGCCTGGAGAGTTTGTCATCACCTTTCCTAAGTCATATCATGCTGGATTTAGCCATGGATTCAACTGTGGAGAAGCAGTAAACTTTGCTGTGAGTGATTGGTTTCCAATAGGGGCTGAAGCTACAAGGCGTTATGCACGTCTTGGAAAGATGCCTATTATTCCCTATGAGGAACTTCTTTGTAATGAAGCAATGTTAATTTACAAGGCAGCAAATAATCTCAAATGCTCCTCCAATAACAAACTCGATTTGGAATCCGACCACGCTACTAAGCTATCTTTTATGCAGCTCATGCGATTTTACGACGAGGCCCTTTCAAGACTGAGAAAAAGTTCAATAGAGTACTCTTCAAGTTCTTCAAATTCTCTTGGCACTGTGGTATGCAGCCTCTGCAGTAGAGACTGTTATGTAGCTTTCTTGCTCTGCAATAAATGCTACTCTCTTCCCTTTTGTATTTTCCATGATGAAACTGAGACTCTCAGTTGTTCATGCGGTAGACAATGTACACTTTACAGGAGAGATGAAATGTTGGCTCTGATGGATGCTGCCACAAGTTTTGAACTGGAAAAAGACATTTTGTTGGAAGTTCAAAGACATAGTGGAGCAAATATACTGTCAAAGACATCCCTTTTTACCAATCAAGAAAGCATTCAAGATAACAAGGTCTAG 1677 0.4061 MYTRRLQRLESVVTSMDMKSSNKTRAAKVSGREKKETTGKEDVLSKLRKVDLADQEWVNKIPECPVFCPSEQEFEDPLVYLQKIASEAQKYGMCKIVSPLNASIPAGVVLMKERGNFKFETIVQPLGYSELNEDKETVYSLRGRKYTYRDFETLANKAFLSRFYSSGSLPSSYLEKLFWHEMEHGEMGTVEYGVNVEGSAFSCDPHDKLGKSKWNLKNFSRLQKSTLQFIDREIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPSHAASRFEEVALDHVFHKNILSKHSGEASAYETLAHKTTMFSPNVLLQHGVPVYKAVQKPGEFVITFPKSYHAGFSHGFNCGEAVNFAVSDWFPIGAEATRRYARLGKMPIIPYEELLCNEAMLIYKAANNLKCSSNNKLDLESDHATKLSFMQLMRFYDEALSRLRKSSIEYSSSSSNSLGTVVCSLCSRDCYVAFLLCNKCYSLPFCIFHDETETLSCSCGRQCTLYRRDEMLALMDAATSFELEKDILLEVQRHSGANILSKTSLFTNQESIQDNKV 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1378 558 ProSiteProfiles JmjN domain profile. 64 105 IPR003349 -
Alju10g1378 558 Gene3D Cupin 64 430 - -
Alju10g1378 558 Pfam jmjN domain 65 97 IPR003349 -
Alju10g1378 558 Pfam JmjC domain, hydroxylase 241 365 IPR003347 -
Alju10g1378 558 SMART cupin_9 208 382 IPR003347 -
Alju10g1378 558 SMART JmjN_1 63 104 IPR003349 -
Alju10g1378 558 SUPERFAMILY Clavaminate synthase-like 142 400 - -
Alju10g1378 558 MobiDBLite consensus disorder prediction 13 40 - -
Alju10g1378 558 PANTHER LYSINE-SPECIFIC DEMETHYLASE 56 527 - -
Alju10g1378 558 MobiDBLite consensus disorder prediction 26 40 - -
Alju10g1378 558 ProSiteProfiles JmjC domain profile. 211 382 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1378 Alju-ChrAlju10 15881844 15885054 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1378 61 529 JUMONJI Transcription Factor Family AT2G34880 31.970 2.66e-61 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Alju10g1378 JmjC 6.3e-42 CL0029