Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1373 ATGATGGACGGAGTTCATGGCGGTGTGGCGAATCCCGCGGCGGCAAATGTGAATTCTCCGCCGCCATTCCTTAGCAAGACCTATGATATGGTCGACGACCCTTCCACAAACTCGGTGGTCTCATGGAGTGATAATAACAACAGTTTTGTTGTTTGGGATGTGCCCGAGTTCGCTAGGGACATCTTGCCCAAGTATTTCAAGCACAACAATTTCTCCAGCTTCGTCAGGCAATTGAATACTTACATTTTACCTGTGGTTGTTGCTGGGTTTGATGAAGCTTTAACTCTCTCTGGCTTGTCATTAATTCGTATCTGGCTTTATAAAAGGTATGTTGATGAAGCTTGCAGATCAGCTTACTCCTTCAAGGGGCCGTTTAAGAAGGAATCCGGAAGCTTAAATTGCTGGGAGGCTGTTGGAAGGCATAGGGAAGGCCACTTGGACCAACAGGGTTTTAGAAAGGTTGATCCAGATCGCTGGGAGTTTGCAAATGAAGGATTTTTAAGGGGTCAGAAGCAACTTTTGAAGAGTATCAGTAGGAGGAAAGCTGCTCAAGTGAACGGTAATCAACAGCCATCTCCAGCACCGAGCAAACCTGTTGGGGCATTTATTGAGGTTGGAAAGTTTGGGCTTGAGGAAGAGGTTGAAAGATTGAAAAGGGATAAGAATGTTCTTATGCAAGAACTTGTTAGGTTGAGACAACAGCAACAAGCAACCGATAACCAATTGCAAAGTGTTGGGCAACGTGTGCAGGTTATGGAGCAGCGTCAGCAACAAATGATGTCATTTCTGGCAAAGGCCATGCAAAGCCCAGGATTCATGTCACAGTTTGTACAGCAGCAGAGTGACAGTAACAGGCATATTACTGGAGGCAATAAAAAGAGGAGACTCCACAGGCAGGAAGAAGATACATTACCCTCTGATCATCTCTATAATGCTCTTGATGGACGTGTTGTTAAATATCAACCTTCCATGAATGAGGCTGCAAAAGCATTATTGCGCCAGATATTGCAAATGAATGCTTCTTCAAGGAGGGAATCATCAATAAATAACCCTGATGCTTTTCTCATTGATGATATTCCTACTGCCATTCCATTAGATAGTGGGAGTTCCTCTAGTCGGGCTTCAGGAGTGACTCTTTCTGAGGTTCCAGCTGCTTCTGGCCAGTCTTATATGGCAGGGCAATCACGGTTGCCTGTTAATCGTGTTTCCGCCAACATATCTCAAATGCAATCTTCCTGTGCTGTGTTGACTGATCCTGTTAAAGTAGTTGAATTTCCTGGATTAAATTTGCATAATTGCCCAGAGAATGTTTTGGGTATTGGTGAAATCCAAGGTGTGGAGACAGAGAGTAGTTTAATGAATCCTGAACTCACTTTCGCGGGGCCTGACAATGGGCATGCAGGAGACATAGACATGATGTCAGCAGTTTTGGATGGGGCACAGTCTGTAGAAGTGGAGGCTGATGCCTTTTCACCTGATCCAGATGGAATTTCTAAGCTCCCAAGCATTAGTGATGTTTTCTGGGAACAGTTTCTCACGGGAAGTCCACTTACAGGCGATACAGATGAAATTAGTTCTTCCCCTCTTGGAGGTGATTTGATCAAGGAAGGGGAATCTCCATCTAGAAAGGATAATGAACAGGAAAAGTTGGATAAGATAAAACATATTGATCATCTTGCTCAACAGATGGAACTTCTTGCTTCCAACAATTCCTAA 1716 0.4417 MMDGVHGGVANPAAANVNSPPPFLSKTYDMVDDPSTNSVVSWSDNNNSFVVWDVPEFARDILPKYFKHNNFSSFVRQLNTYILPVVVAGFDEALTLSGLSLIRIWLYKRYVDEACRSAYSFKGPFKKESGSLNCWEAVGRHREGHLDQQGFRKVDPDRWEFANEGFLRGQKQLLKSISRRKAAQVNGNQQPSPAPSKPVGAFIEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQLQSVGQRVQVMEQRQQQMMSFLAKAMQSPGFMSQFVQQQSDSNRHITGGNKKRRLHRQEEDTLPSDHLYNALDGRVVKYQPSMNEAAKALLRQILQMNASSRRESSINNPDAFLIDDIPTAIPLDSGSSSSRASGVTLSEVPAASGQSYMAGQSRLPVNRVSANISQMQSSCAVLTDPVKVVEFPGLNLHNCPENVLGIGEIQGVETESSLMNPELTFAGPDNGHAGDIDMMSAVLDGAQSVEVEADAFSPDPDGISKLPSISDVFWEQFLTGSPLTGDTDEISSSPLGGDLIKEGESPSRKDNEQEKLDKIKHIDHLAQQMELLASNNS 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1373 571 Pfam HSF-type DNA-binding 23 180 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju10g1373 571 Coils Coil 207 234 - -
Alju10g1373 571 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 383 IPR027725 -
Alju10g1373 571 MobiDBLite consensus disorder prediction 281 303 - -
Alju10g1373 571 Gene3D - 15 181 IPR036388 -
Alju10g1373 571 SUPERFAMILY "Winged helix" DNA-binding domain 21 81 IPR036390 -
Alju10g1373 571 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju10g1373 571 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju10g1373 571 PRINTS Heat shock factor (HSF) domain signature 23 46 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju10g1373 571 SMART hsfneu3 19 180 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju10g1373 571 MobiDBLite consensus disorder prediction 517 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1373 Alju-ChrAlju10 15817716 15822713 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1373 17 81 HSF AT5G16820 83.077 1.01e-29 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Alju10g1373 HSF_DNA-bind 2.1e-28 CL0123