Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1271 ATGGCTGCGGTTGCTGAGATTTCCGTGGATGCAGCAGCAGCTGCGAACCAGTTGGACCCAAATTCCAAGTCGGAATCCGAATTCAATGTGCAAAAGCTCGTCGATATGTTCACTAAGTTGAATCCTTTGGCGAAAGAGTTTATCCCTTCAAGATATTCTCACCATGATCACCTCCATCAGGGCGATCATCAGCTCCCTCCGAACAATTTCCTGGTTGGAAATAATATGGCAGCTGATGGTCACCAAAATAATCGAAGAAGAAGAACTAATTATACCCAGGGGAGGAGAAGGTCAAATGGAAGAGTGCATAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGATATAGATCAGCATGTTACTGAGGAGCGGCTTGCTGCCTTATTTACTAATTGTGGACAAGTTATTGACTGCCGAATTTGTGGTGATCCACATTCAATTCTTCGTTTTGCATTTGTGGAGTTTGCAGATGAGCATGGTGCAAGAGCAGCTTTAAACCTTGGTGGCACTGTGCTTGGGTACTATCCAGTTAGGGTCCTTCCTTCCAAAACTGCCATCCTTCCTGTGAATCCCACATTCCTCCCTAGGTCTGAGGATGAACGGGAAATGTGCAGCAGGACTGTGTACTGTACAAATATTGATAAAAAGATTTCTCAAGCTGAAGTGAAGAACTTCTTTGAAACTGCTTGTGGTGGTGAGGTTACCCGCTTGAGGCTTTTAGGAGATCATGCTCATTCAACTCGAATTGCTTTTGTAGAATTCGCAATGGCTGAAAGTGCCATTATGGCACTAAATTGTAGTGGGATGCCCTTGGGAAGCCAGCCTATCAGGGTAAGTCCTTCGAAGACGCCTGTGAGGCCAAGAATGCCCCCCATCCAACACCCCATTAACTGA 906 0.4514 MAAVAEISVDAAAAANQLDPNSKSESEFNVQKLVDMFTKLNPLAKEFIPSRYSHHDHLHQGDHQLPPNNFLVGNNMAADGHQNNRRRRTNYTQGRRRSNGRVHKAQREDSIRRTVYVSDIDQHVTEERLAALFTNCGQVIDCRICGDPHSILRFAFVEFADEHGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKISQAEVKNFFETACGGEVTRLRLLGDHAHSTRIAFVEFAMAESAIMALNCSGMPLGSQPIRVSPSKTPVRPRMPPIQHPIN 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1271 301 MobiDBLite consensus disorder prediction 75 107 - -
Alju10g1271 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 280 IPR000504 GO:0003723
Alju10g1271 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 177 IPR000504 GO:0003723
Alju10g1271 301 Gene3D - 198 292 IPR012677 -
Alju10g1271 301 Gene3D - 73 189 IPR012677 -
Alju10g1271 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 188 IPR000504 GO:0003723
Alju10g1271 301 FunFam Polyadenylate-binding protein-interacting protein 10 204 283 - -
Alju10g1271 301 MobiDBLite consensus disorder prediction 282 301 - -
Alju10g1271 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 287 IPR000504 GO:0003723
Alju10g1271 301 SUPERFAMILY RNA-binding domain, RBD 200 294 IPR035979 GO:0003676
Alju10g1271 301 CDD RRM2_CID8_like 206 288 IPR034825 -
Alju10g1271 301 SUPERFAMILY RNA-binding domain, RBD 82 189 IPR035979 GO:0003676
Alju10g1271 301 CDD RRM1_CID8_like 111 190 IPR034823 -
Alju10g1271 301 FunFam Polyadenylate-binding protein-interacting protein 11 78 190 - -
Alju10g1271 301 SMART rrm1_1 211 283 IPR000504 GO:0003723
Alju10g1271 301 SMART rrm1_1 114 184 IPR000504 GO:0003723
Alju10g1271 301 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 36 292 - -
Alju10g1271 301 Pfam Ataxin-2 C-terminal region 36 50 IPR009818 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1271 Alju-ChrAlju10 13966379 13972669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1271 110 268 Eukaryotic Initiation Factors Gene Family AT1G34140 25.309 2.97e-11 61.6