Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1209 ATGGATCCCAATTATCATGGCTTACCTCCCCTCAAGAGATTCAGACTCATCCAACAGCAACAAGAGCTCCAGAATCAACAGCCACATCACAATCACATAACTCACGATGAACGCGCCGGCGTTTCCTGCTCAACCTTACCTGCAAAGAAGCGGAAGGAATCTCGAGATTCAACATTTCTTTCTGATTCGCCGGTTTCAGTTTCTGTCAATACTTATTCGTTACCGGCCAAGAAACGGGTATGGGCTCTTCAACCTGATTTTGTTTCCGATGTCGGTGTTTCTTCTATTGACCTCAATGTTGAATACAAACCATCCATTGAGGAAGAAGTAAAATCAGTAAATGATGAACCCAGTAATGCCGAGATTCCACTTGTAGCAAATTCCCTCGATGTTGAAAATGAAAATGAAAATATTGAAGATGTTGACGAGGATGGGATTGTGTGTGCTGTATGTCAAAGCACCGATGGGGATCCAGCAGATCCAATTGTTCTCTGTGATGGGTGTGATCTAATGGTTCACGCCTCATGCTATGGAAATCCGCTTGTAAAAGGAATACCAGACGGTGATTGGTTCTGTGAAAAATGCAGAGTTTCGTCATCTTGTCAAACTAAGAAAGATGATGAAAACAACATTTCTTGTTGCCTCTGTCCTACAAAGGAAGGGGCTATGAAACCCACGGTAGATGAACGGTGGGCCCATATTGTGTGTGCACTTTTAGTCCCTGAGGTGTTTTTTAAGGACTCAGAAGGAAGAGAAGGGATTGATTGCTCAATGATTCCCAAGAAGAGGTGGTCTGGGAAGTGTTATATTTGTGAATCTTCAAGTGGCTGTGCCATTGTGTGTTCTGAGATCAAGTGTCCTTTGGCCTTTCATGTCACTTGTGGGTTGAAAGAGGATCTTAGCATTGAGTATCGTGAAGGGAAGAAGAATGCCACCATCGTTGCTGGTTTCTGCAAAAGCCACAGTGAGTTATGGAAAAAGCAACAGCTATCTGGGAAATATAGAATCGTTGCTGAAGAAAACAAGTAG 1029 0.4315 MDPNYHGLPPLKRFRLIQQQQELQNQQPHHNHITHDERAGVSCSTLPAKKRKESRDSTFLSDSPVSVSVNTYSLPAKKRVWALQPDFVSDVGVSSIDLNVEYKPSIEEEVKSVNDEPSNAEIPLVANSLDVENENENIEDVDEDGIVCAVCQSTDGDPADPIVLCDGCDLMVHASCYGNPLVKGIPDGDWFCEKCRVSSSCQTKKDDENNISCCLCPTKEGAMKPTVDERWAHIVCALLVPEVFFKDSEGREGIDCSMIPKKRWSGKCYICESSSGCAIVCSEIKCPLAFHVTCGLKEDLSIEYREGKKNATIVAGFCKSHSELWKKQQLSGKYRIVAEENK 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1209 342 PANTHER PHD FINGER PROTEINS 43 322 - -
Alju10g1209 342 SUPERFAMILY FYVE/PHD zinc finger 134 201 IPR011011 -
Alju10g1209 342 ProSiteProfiles Zinc finger PHD-type profile. 145 198 IPR019787 -
Alju10g1209 342 MobiDBLite consensus disorder prediction 21 62 - -
Alju10g1209 342 CDD ePHD 213 321 - -
Alju10g1209 342 SMART PHD_3 147 196 IPR001965 -
Alju10g1209 342 SMART PHD_3 267 322 IPR001965 -
Alju10g1209 342 ProSiteProfiles Extended PHD (ePHD) domain profile. 210 322 IPR034732 -
Alju10g1209 342 Pfam PHD-zinc-finger like domain 212 321 - -
Alju10g1209 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 324 IPR013083 -
Alju10g1209 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 202 IPR013083 -
Alju10g1209 342 CDD PHD_BRPF_JADE_like 147 195 - -
Alju10g1209 342 Pfam PHD-finger 147 197 IPR019787 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1209 46 340 C2H2 Transcription Factor Family AT3G14740 57.188 5.05e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju10g1209 zf-HC5HC2H_2 3.9e-29 CL0390